Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0333971 Rosa chinensis HOM05D001833 ORTHO05D001776 2.6e-22 107.8 55 100.0
FvH4_2g11950 Fragaria vesca HOM05D001833 ORTHO05D001776 2.8e-16 87.8 45 100.0
FAN15G0182 Fragaria x ananassa HOM05D001833 ORTHO05D001776 2.8e-16 87.8 45 100.0
FAN24G0574 Fragaria x ananassa HOM05D001833 ORTHO05D001776 2.8e-16 87.8 45 100.0
FAN27G1099 Fragaria x ananassa HOM05D001833 ORTHO05D001776 2.8e-16 87.8 45 100.0
RcHm_v2.0_Chr6g0272001 Rosa chinensis HOM05D001833 ORTHO05D001776 2.8e-16 87.8 45 100.0
CANSAT25G3276 Cannabis sativa HOM05D001833 ORTHO05D001776 6.2e-16 86.7 45 97.8
MD05G1041900 Malus domestica HOM05D001833 ORTHO05D001776 3.1e-15 84.3 45 95.6
Atru.chr13.1775 Acer truncatum HOM05D001833 ORTHO05D001776 5.3e-15 83.6 45 93.3
MD10G1048400 Malus domestica HOM05D001833 ORTHO05D001776 5.3e-15 83.6 45 93.3
Prupe.8G057800 Prunus persica HOM05D001833 ORTHO05D001776 5.3e-15 83.6 45 95.6
Manes.02G192000 Manihot esculenta HOM05D001833 ORTHO05D001776 6.9e-15 83.2 45 93.3
Manes.18G100900 Manihot esculenta HOM05D001833 ORTHO05D001776 6.9e-15 83.2 45 93.3
Ciclev10002092m.g Citrus clementina HOM05D001833 ORTHO05D001776 2.0e-14 81.6 45 93.3
Dinv03384 Davidia involucrata HOM05D001833 ORTHO05D001776 2.0e-14 81.6 45 93.3
vmacro00763 Vaccinium macrocarpon HOM05D001833 ORTHO05D001776 2.0e-14 81.6 45 91.1
CSS0039526 Camellia sinensis var. sinensis HOM05D001833 ORTHO05D001776 2.6e-14 81.3 45 91.1
Dinv41711 Davidia involucrata HOM05D001833 ORTHO05D001776 2.6e-14 81.3 45 93.3
PGR042G3591 Punica granatum HOM05D001833 ORTHO05D001776 2.6e-14 81.3 45 91.1
Potri.013G113000 Populus trichocarpa HOM05D001833 ORTHO05D001776 3.4e-14 80.9 45 91.1
TWI32G0603 Tripterygium wilfordii HOM05D001833 ORTHO05D001776 3.4e-14 80.9 45 93.3
Actinidia03512 Actinidia chinensis HOM05D001833 ORTHO05D001776 5.8e-14 80.1 45 88.9
Potri.019G083500 Populus trichocarpa HOM05D001833 ORTHO05D001776 5.8e-14 80.1 45 88.9
Sabra19G0094900 Salix brachista HOM05D001833 ORTHO05D001776 5.8e-14 80.1 45 91.1
Thecc.08G183600 Theobroma cacao HOM05D001833 ORTHO05D001776 5.8e-14 80.1 45 91.1
BcaC04g20959 Brassica carinata HOM05D001833 ORTHO05D001776 7.6e-14 79.7 45 88.9
A09p29510 Brassica napus HOM05D001833 ORTHO05D001776 7.6e-14 79.7 45 88.9
C09p37540 Brassica napus HOM05D001833 ORTHO05D001776 7.6e-14 79.7 45 88.9
BolC9t56584H Brassica oleracea HOM05D001833 ORTHO05D001776 7.6e-14 79.7 45 88.9
BraA09t38521Z Brassica rapa HOM05D001833 ORTHO05D001776 7.6e-14 79.7 45 88.9
Hma1.2p1_0162F.1_g072240 Hydrangea macrophylla HOM05D001833 ORTHO05D001776 7.6e-14 79.7 45 91.1
Lj7P290T34 Lonicera japonica HOM05D001833 ORTHO05D001776 7.6e-14 79.7 45 91.1
Rhsim11G0058700 Rhododendron simsii HOM05D001833 ORTHO05D001776 7.6e-14 79.7 44 90.9
TWI60G1005 Tripterygium wilfordii HOM05D001833 ORTHO05D001776 7.6e-14 79.7 45 93.3
BcaB01g01405 Brassica carinata HOM05D001833 ORTHO05D001776 1.0e-13 79.3 45 86.7
Cpa.g.c35821 Carica papaya HOM05D001833 ORTHO05D001776 1.0e-13 79.3 44 93.2
Duzib116G0056 Durio zibethinus HOM05D001833 ORTHO05D001776 1.0e-13 79.3 45 86.7
SGA_v2.0_scaffold149G36596 Striga asiatica HOM05D001833 ORTHO05D001776 1.0e-13 79.3 45 86.7
TAR381G1445 Trochodendron aralioides HOM05D001833 ORTHO05D001776 1.0e-13 79.3 45 91.1
Actinidia29418 Actinidia chinensis HOM05D001833 ORTHO05D001776 1.3e-13 79.0 45 88.9
MSTRG.22448 Avicennia marina HOM05D001833 ORTHO05D001776 1.3e-13 79.0 45 84.4
AL6G43160 Arabidopsis lyrata HOM05D001833 ORTHO05D001776 1.7e-13 78.6 45 86.7
AT4G09580 Arabidopsis thaliana HOM05D001833 ORTHO05D001776 1.7e-13 78.6 45 86.7
Carub.0006s2803 Capsella rubella HOM05D001833 ORTHO05D001776 1.7e-13 78.6 45 86.7
CARHR260450 Cardamine hirsuta HOM05D001833 ORTHO05D001776 1.7e-13 78.6 45 86.7
Thhalv10028857m.g Eutrema salsugineum HOM05D001833 ORTHO05D001776 1.7e-13 78.6 45 86.7
Sp6g08030 Schrenkiella parvula HOM05D001833 ORTHO05D001776 1.7e-13 78.6 45 86.7
EL10Ac1g00083 Beta vulgaris HOM05D001833 ORTHO05D001776 2.2e-13 78.2 45 88.9
Oeu039615.1 Olea europaea HOM05D001833 ORTHO05D001776 2.2e-13 78.2 45 86.7
Hund27086 Selenicereus undatus HOM05D001833 ORTHO05D001776 2.2e-13 78.2 45 88.9
CSS0022356 Camellia sinensis var. sinensis HOM05D001833 ORTHO05D001776 2.9e-13 77.8 45 86.7
Duzib177G0683 Durio zibethinus HOM05D001833 ORTHO05D001776 2.9e-13 77.8 45 88.9
Lj5g0004468 Lotus japonicus HOM05D001833 ORTHO05D001776 2.9e-13 77.8 45 88.9
Sabra13G0095900 Salix brachista HOM05D001833 ORTHO05D001776 2.9e-13 77.8 45 86.7
Aa31LG9G14880 Aethionema arabicum HOM05D001833 ORTHO05D001776 3.8e-13 77.4 45 84.4
Ah.05g178210 Amaranthus hybridus HOM05D001833 ORTHO05D001776 3.8e-13 77.4 45 86.7
Ca_10616_v3 Cicer arietinum L. HOM05D001833 ORTHO05D001776 3.8e-13 77.4 45 88.9
Cc10_g10420 Coffea canephora HOM05D001833 ORTHO05D001776 3.8e-13 77.4 45 86.7
Migut.N03348 Erythranthe guttata HOM05D001833 ORTHO05D001776 3.8e-13 77.4 45 80.0
Lj4A497G45 Lonicera japonica HOM05D001833 ORTHO05D001776 3.8e-13 77.4 45 88.9
Oeu021015.2 Olea europaea HOM05D001833 ORTHO05D001776 3.8e-13 77.4 45 86.7
TAR628G1668 Trochodendron aralioides HOM05D001833 ORTHO05D001776 3.8e-13 77.4 45 88.9
Aqoxy5G02592 Aquilegia oxysepala HOM05D001833 ORTHO05D001776 5.0e-13 77.0 45 86.7
Cc00_g10270 Coffea canephora HOM05D001833 ORTHO05D001776 5.0e-13 77.0 45 86.7
Migut.C01253 Erythranthe guttata HOM05D001833 ORTHO05D001776 5.0e-13 77.0 45 80.0
Lsat_1_v5_gn_4_135961 Lactuca sativa HOM05D001833 ORTHO05D001776 5.0e-13 77.0 45 86.7
Peaxi162Scf00560g00733 Petunia axillaris HOM05D001833 ORTHO05D001776 5.0e-13 77.0 45 80.0
Phvul.007G089500 Phaseolus vulgaris HOM05D001833 ORTHO05D001776 6.5e-13 76.6 45 86.7
TPR.G8823 Trifolium pratense HOM05D001833 ORTHO05D001776 6.5e-13 76.6 45 86.7
VMungo0720G0103 Vigna mungo HOM05D001833 ORTHO05D001776 6.5e-13 76.6 45 86.7
Glyma.10G216600 Glycine max HOM05D001833 ORTHO05D001776 8.4e-13 76.3 45 86.7
Glyma.20G175400 Glycine max HOM05D001833 ORTHO05D001776 8.4e-13 76.3 45 86.7
Lalb_Chr03g0036171 Lupinus albus HOM05D001833 ORTHO05D001776 8.4e-13 76.3 45 88.9
Medtr1g096450 Medicago truncatula HOM05D001833 ORTHO05D001776 8.4e-13 76.3 45 86.7
Psat6g187520 Pisum sativum HOM05D001833 ORTHO05D001776 8.4e-13 76.3 45 86.7
Sc23g0001240 Simmondsia chinensis HOM05D001833 ORTHO05D001776 8.4e-13 76.3 45 86.7
SGA_v2.0_scaffold25G11070 Striga asiatica HOM05D001833 ORTHO05D001776 8.4e-13 76.3 52 73.1
CiPaw.08G059300 Carya illinoinensis HOM05D001833 ORTHO05D001776 1.4e-12 75.5 45 86.7
AUR62022691 Chenopodium quinoa HOM05D001833 ORTHO05D001776 1.4e-12 75.5 45 86.7
Gorai.005G074400 Gossypium raimondii HOM05D001833 ORTHO05D001776 1.4e-12 75.5 45 84.4
Lj4A502G47 Lonicera japonica HOM05D001833 ORTHO05D001776 1.4e-12 75.5 44 88.6
Sed0001822 Sechium edule HOM05D001833 ORTHO05D001776 1.4e-12 75.5 45 84.4
SGA_v2.0_scaffold118G32475 Striga asiatica HOM05D001833 ORTHO05D001776 1.4e-12 75.5 45 84.4
GSVIVG01034486001 Vitis vinifera HOM05D001833 ORTHO05D001776 1.4e-12 75.5 45 86.7
AUR62004645 Chenopodium quinoa HOM05D001833 ORTHO05D001776 1.9e-12 75.1 45 86.7
ClCG11G008100 Citrullus lanatus HOM05D001833 ORTHO05D001776 1.9e-12 75.1 45 84.4
DCAR_001045 Daucus carota HOM05D001833 ORTHO05D001776 1.9e-12 75.1 45 86.7
SalBow6G3973 Salvia bowleyana HOM05D001833 ORTHO05D001776 1.9e-12 75.1 45 77.8
PGSC0003DMG400000881 Solanum tuberosum HOM05D001833 ORTHO05D001776 1.9e-12 75.1 45 82.2
BcaB03g14915 Brassica carinata HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BcaB03g15627 Brassica carinata HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BcaB05g24694 Brassica carinata HOM05D000010 ORTHO05D000063 2.5e-12 74.7 45 82.2
BcaC03g15313 Brassica carinata HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BcaC08g45746 Brassica carinata HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BcaC08g46633 Brassica carinata HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BcaC08g46635 Brassica carinata HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BcaC08g46638 Brassica carinata HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
A02p17580 Brassica napus HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
A07p30490 Brassica napus HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
A07p38110 Brassica napus HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
C02p29230 Brassica napus HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
C06p35260 Brassica napus HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
C06p46030 Brassica napus HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BolC2t08973H Brassica oleracea HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BolC6t38631H Brassica oleracea HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BolC6t39655H Brassica oleracea HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BraA02t06804Z Brassica rapa HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BraA07t30685Z Brassica rapa HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
BraA07t31376Z Brassica rapa HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
Carub.0002s1872 Capsella rubella HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
CARHR064770 Cardamine hirsuta HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
Cfa013852 Carpinus fangiana HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 86.7
Haze_22525 Corylus avellana HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 86.7
ECA232G4706 Erigeron canadensis HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 84.4
Thhalv10018999m.g Eutrema salsugineum HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
Sp5g27010 Schrenkiella parvula HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
Solyc11g018620.3 Solanum lycopersicum HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
Sopen11g009590 Solanum pennellii HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 82.2
THA.LOC104816319 Tarenaya hassleriana HOM05D001833 ORTHO05D001776 2.5e-12 74.7 45 80.0
Aa31LG4G8680 Aethionema arabicum HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 82.2
arahy.Tifrunner.gnm1.ann1.M52U16 Arachis hypogaea HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 84.4
arahy.Tifrunner.gnm1.ann1.M8FFM7 Arachis hypogaea HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 84.4
ClCG09G010580 Citrullus lanatus HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 82.2
Gohir.A02G060200 Gossypium hirsutum HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 82.2
Lalb_Chr02g0141811 Lupinus albus HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 84.4
Lalb_Chr21g0305801 Lupinus albus HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 84.4
Nitab4.5_0000303g0120 Nicotiana tabacum HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 82.2
Nitab4.5_0000807g0040 Nicotiana tabacum HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 82.2
Peaxi162Scf00268g01133 Petunia axillaris HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 82.2
Sed0000100 Sechium edule HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 82.2
Sed0012961 Sechium edule HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 82.2
Hund16799 Selenicereus undatus HOM05D001833 ORTHO05D001776 3.2e-12 74.3 45 82.2
MELO3C024120.2 Cucumis melo HOM05D001833 ORTHO05D001776 4.2e-12 73.9 45 82.2
CsaV3_7G023760 Cucumis sativus L. HOM05D001833 ORTHO05D001776 4.2e-12 73.9 45 82.2
MBI09_g01932_MAGBIO Magnolia biondii HOM05D001833 ORTHO05D001776 4.2e-12 73.9 45 84.4
Nitab4.5_0001018g0010 Nicotiana tabacum HOM05D001833 ORTHO05D001776 4.2e-12 73.9 45 80.0
THA.LOC104810547 Tarenaya hassleriana HOM05D001833 ORTHO05D001776 4.2e-12 73.9 45 82.2
Gohir.D02G065700 Gossypium hirsutum HOM05D001833 ORTHO05D001776 5.5e-12 73.6 45 82.2
Oeu052901.1 Olea europaea HOM05D001833 ORTHO05D001776 5.5e-12 73.6 44 81.8
SGA_v2.0_scaffold24G10553 Striga asiatica HOM05D001833 ORTHO05D001776 5.5e-12 73.6 45 84.4
SGA_v2.0_scaffold322G48625 Striga asiatica HOM05D001833 ORTHO05D001776 5.5e-12 73.6 45 80.0
HPP92_019220 Vanilla planifolia HOM05D001833 ORTHO05D001776 5.5e-12 73.6 45 80.0
Eucgr.F02614 Eucalyptus grandis HOM05D001833 ORTHO05D001776 7.1e-12 73.2 45 84.4
Lsat_1_v5_gn_1_9980 Lactuca sativa HOM05D001833 ORTHO05D001776 7.1e-12 73.2 45 82.2
Nn5g27695 Nelumbo nucifera HOM05D001833 ORTHO05D001776 7.1e-12 73.2 44 84.1
SalBow7G2016 Salvia bowleyana HOM05D001833 ORTHO05D001776 7.1e-12 73.2 40 90.0
BcaC08g46639 Brassica carinata HOM05D001833 ORTHO05D001776 9.3e-12 72.8 44 81.8
CiPaw.07G159500 Carya illinoinensis HOM05D001833 ORTHO05D001776 9.3e-12 72.8 45 80.0
MELO3C008124.2 Cucumis melo HOM05D001833 ORTHO05D001776 9.3e-12 72.8 45 82.2
CsaV3_2G033510 Cucumis sativus L. HOM05D001833 ORTHO05D001776 9.3e-12 72.8 45 82.2
Lalb_Chr06g0162051 Lupinus albus HOM05D001833 ORTHO05D001776 9.3e-12 72.8 45 82.2
PSO017G5955 Papaver somniferum HOM05D001833 ORTHO05D001776 9.3e-12 72.8 45 84.4
PSO063G6985 Papaver somniferum HOM05D001833 ORTHO05D001776 9.3e-12 72.8 45 84.4
SGA_v2.0_scaffold149G36587 Striga asiatica HOM05D001833 ORTHO05D001776 9.3e-12 72.8 44 79.5
Zm00001eb054370 Zea mays HOM05D001833 ORTHO05D001776 9.3e-12 72.8 45 77.8
HanXRQChr04g0107541 Helianthus annuus HOM05D001833 ORTHO05D001776 1.2e-11 72.4 45 84.4
MBI09_g40925_MAGBIO Magnolia biondii HOM05D001833 ORTHO05D001776 1.2e-11 72.4 45 80.0
SGA_v2.0_scaffold3794G54395 Striga asiatica HOM05D001833 ORTHO05D001776 1.2e-11 72.4 45 77.8
HanXRQChr11g0326081 Helianthus annuus HOM05D001833 ORTHO05D001776 1.6e-11 72.0 45 77.8
AL2G31550 Arabidopsis lyrata HOM05D001833 ORTHO05D001776 2.1e-11 71.6 45 80.0
SGA_v2.0_scaffold386G50494 Striga asiatica HOM05D001833 ORTHO05D001776 2.1e-11 71.6 44 79.5
QL02p033799 Quercus lobata HOM05D001833 ORTHO05D001776 3.5e-11 70.9 43 81.4
CAN.G199.13 Capsicum annuum HOM05D001833 ORTHO05D001776 4.6e-11 70.5 45 77.8
Solyc06g065400.3 Solanum lycopersicum HOM05D001833 ORTHO05D001776 4.6e-11 70.5 45 77.8
Sopen06g023880 Solanum pennellii HOM05D001833 ORTHO05D001776 4.6e-11 70.5 45 77.8
PGSC0003DMG400026114 Solanum tuberosum HOM05D001833 ORTHO05D001776 4.6e-11 70.5 45 77.8
BcaB03g15629 Brassica carinata HOM05D001833 ORTHO05D001776 1.3e-10 68.9 42 78.6
CDE02G2095 Ceratophyllum demersum HOM05D001833 ORTHO05D001776 6.7e-10 66.6 45 77.8
Os03g0703900 Oryza sativa ssp. japonica HOM05D001833 ORTHO05D001776 1.1e-09 65.9 45 68.9
CDE08G0639 Ceratophyllum demersum HOM05D001833 ORTHO05D001776 4.3e-09 63.9 45 75.6
SEGI_12492 Sequoiadendron giganteum HOM05D001833 ORTHO05D001776 1.6e-08 62.0 45 68.9
SGA_v2.0_scaffold2815G54214 Striga asiatica HOM05D001833 ORTHO05D001776 5.3e-07 57.0 36 75.0
TAR629G1441 Trochodendron aralioides HOM05D001833 ORTHO05D001776 3.4e-06 54.3 41 63.4
C01p11510 Brassica napus HOM05D001833 ORTHO05D001776 4.5e-06 53.9 42 57.1
Oeu030000.1 Olea europaea HOM05D001833 ORTHO05D001776 4.5e-06 53.9 34 76.5
A01p09850 Brassica napus HOM05D001833 ORTHO05D001776 1.0e-05 52.8 42 54.8
BraA01t00929Z Brassica rapa HOM05D001833 ORTHO05D001776 1.0e-05 52.8 42 54.8
Cc08_g03120 Coffea canephora HOM05D001833 ORTHO05D001776 1.0e-05 52.8 40 60.0


User provided reference genes

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