Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 6.6e-29 130.2 74 100.0
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 7.8e-22 106.7 72 76.4
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 4.2e-15 84.3 76 67.1
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 6.0e-14 80.5 73 50.7
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 1.8e-13 79.0 76 52.6
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 1.8e-13 79.0 74 50.0
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 3.0e-13 78.2 72 56.9
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 6.7e-13 77.0 73 53.4
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 1.9e-12 75.5 73 54.8
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 3.3e-12 74.7 72 54.2
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 3.3e-12 74.7 73 58.9
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 3.3e-12 74.7 73 58.9
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 3.3e-12 74.7 73 58.9
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 9.6e-12 73.2 72 62.5
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 9.6e-12 73.2 75 52.0
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 1.3e-11 72.8 73 57.5
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 1.6e-11 72.4 74 48.6
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 1.6e-11 72.4 58 60.3
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 2.1e-11 72.0 71 56.3
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 3.7e-11 71.2 78 57.7
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 3.7e-11 71.2 76 60.5
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 4.8e-11 70.9 68 54.4
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 4.8e-11 70.9 75 60.0
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 6.2e-11 70.5 67 56.7
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 6.2e-11 70.5 71 50.7
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 8.1e-11 70.1 40 80.0
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 1.1e-10 69.7 40 80.0
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 1.4e-10 69.3 40 77.5
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 1.8e-10 68.9 40 82.5
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 2.4e-10 68.6 77 51.9
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 3.1e-10 68.2 40 80.0
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 3.1e-10 68.2 40 80.0
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 3.1e-10 68.2 40 80.0
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 3.1e-10 68.2 40 80.0
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 3.1e-10 68.2 40 75.0
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 4.0e-10 67.8 54 61.1
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 5.3e-10 67.4 70 55.7
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 6.9e-10 67.0 39 69.2
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 6.9e-10 67.0 73 54.8
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 9.0e-10 66.6 37 81.1
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 9.0e-10 66.6 37 81.1
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 9.0e-10 66.6 37 81.1
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 9.0e-10 66.6 37 81.1
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 1.2e-09 66.2 74 48.6
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.5e-09 65.9 75 49.3
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 2.0e-09 65.5 74 44.6
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 2.0e-09 65.5 40 72.5
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 2.6e-09 65.1 69 47.8
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 2.6e-09 65.1 76 48.7
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 2.6e-09 65.1 76 48.7
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 3.4e-09 64.7 74 45.9
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 3.4e-09 64.7 74 52.7
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 4.5e-09 64.3 57 50.9
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 4.5e-09 64.3 52 51.9
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 4.5e-09 64.3 71 46.5
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 7.6e-09 63.5 42 61.9
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 7.6e-09 63.5 41 63.4
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 7.6e-09 63.5 38 78.9
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 1.0e-08 63.2 42 64.3
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 1.3e-08 62.8 43 67.4
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 1.7e-08 62.4 37 73.0
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 1.7e-08 62.4 68 50.0
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 2.2e-08 62.0 42 66.7
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 2.2e-08 62.0 57 54.4
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 2.9e-08 61.6 40 65.0
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 2.9e-08 61.6 42 64.3
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 2.9e-08 61.6 37 75.7
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 4.9e-08 60.8 39 69.2
Haze_04563 Corylus avellana HOM05D003846 ORTHO05D009922 8.4e-08 60.1 49 65.3
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 8.4e-08 60.1 73 42.5
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 8.4e-08 60.1 37 70.3
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 1.1e-07 59.7 59 49.2
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 1.1e-07 59.7 42 61.9
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 1.1e-07 59.7 68 42.6
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 1.9e-07 58.9 37 67.6
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 1.9e-07 58.9 38 65.8
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 3.2e-07 58.2 69 55.1
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 3.2e-07 58.2 73 41.1
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 4.2e-07 57.8 40 60.0
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 5.5e-07 57.4 70 42.9
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 7.1e-07 57.0 39 59.0
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 9.3e-07 56.6 39 56.4
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 1.2e-06 56.2 68 44.1
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 1.6e-06 55.8 40 57.5


User provided reference genes

Program Settings