Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 2.9e-72 275.0 130 100.0
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 2.9e-72 275.0 130 100.0
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 9.9e-28 127.1 77 79.2
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.9e-27 125.6 78 75.6
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 8.3e-27 124.0 78 74.4
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.9e-26 122.9 78 75.6
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 2.4e-26 122.5 78 73.1
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 4.1e-26 121.7 78 71.8
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.4e-26 121.3 78 74.4
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 5.4e-26 121.3 78 74.4
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 5.4e-26 121.3 78 74.4
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.2e-25 120.2 78 70.5
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.6e-25 119.8 78 71.8
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.6e-25 119.8 80 70.0
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 2.1e-25 119.4 78 74.4
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.5e-25 118.6 78 73.1
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.5e-25 118.6 78 73.1
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 3.5e-25 118.6 78 69.2
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 4.6e-25 118.2 82 68.3
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 6.0e-25 117.9 78 73.1
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.0e-25 117.9 78 70.5
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 6.0e-25 117.9 78 70.5
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.0e-25 117.9 78 67.9
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.0e-25 117.9 78 67.9
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 6.0e-25 117.9 78 73.1
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 7.8e-25 117.5 78 69.2
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 7.8e-25 117.5 78 69.2
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.8e-25 117.5 78 73.1
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.3e-24 116.7 79 70.9
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.3e-24 116.7 77 71.4
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 1.7e-24 116.3 78 67.9
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 2.3e-24 115.9 78 69.2
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 3.0e-24 115.5 78 70.5
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 3.0e-24 115.5 78 66.7
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.0e-24 115.5 78 69.2
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-24 115.5 78 70.5
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.0e-24 115.5 78 70.5
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.0e-24 115.5 78 70.5
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.0e-24 115.5 78 71.8
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 3.0e-24 115.5 78 66.7
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 3.0e-24 115.5 78 69.2
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 3.9e-24 115.2 78 67.9
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 5.1e-24 114.8 78 66.7
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 6.6e-24 114.4 76 69.7
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 6.6e-24 114.4 78 70.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 8.6e-24 114.0 78 66.7
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 8.6e-24 114.0 78 70.5
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 8.6e-24 114.0 78 66.7
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 1.1e-23 113.6 78 71.8
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.1e-23 113.6 76 68.4
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 1.5e-23 113.2 78 67.9
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 1.5e-23 113.2 78 67.9
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.9e-23 112.8 76 69.7
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.5e-23 112.5 78 65.4
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 2.5e-23 112.5 78 65.4
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 3.3e-23 112.1 78 67.9
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 3.3e-23 112.1 78 66.7
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 3.3e-23 112.1 81 66.7
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 3.3e-23 112.1 78 70.5
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 3.3e-23 112.1 78 65.4
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 3.3e-23 112.1 78 65.4
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 4.3e-23 111.7 76 68.4
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 4.3e-23 111.7 78 66.7
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 5.6e-23 111.3 78 67.9
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 7.3e-23 110.9 78 64.1
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 7.3e-23 110.9 77 67.5
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 7.3e-23 110.9 75 66.7
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 9.5e-23 110.5 85 62.4
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.2e-22 110.2 82 62.2
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.6e-22 109.8 78 69.2
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.6e-22 109.8 78 67.9
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.6e-22 109.8 85 65.9
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 2.1e-22 109.4 76 67.1
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 2.1e-22 109.4 77 67.5
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.8e-22 109.0 78 66.7
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 2.8e-22 109.0 78 66.7
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 2.8e-22 109.0 78 67.9
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.8e-22 109.0 75 69.3
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 3.6e-22 108.6 78 64.1
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 3.6e-22 108.6 78 64.1
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 3.6e-22 108.6 78 64.1
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 3.6e-22 108.6 76 67.1
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 4.7e-22 108.2 76 64.5
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 8.1e-22 107.5 78 64.1
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 8.1e-22 107.5 78 65.4
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.1e-21 107.1 78 65.4
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.1e-21 107.1 78 65.4
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.1e-21 107.1 78 61.5
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.4e-21 106.7 78 65.4
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.8e-21 106.3 77 63.6
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.4e-21 105.9 76 64.5
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 6.8e-21 104.4 78 61.5
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 6.8e-21 104.4 78 64.1
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 8.9e-21 104.0 78 64.1
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 8.9e-21 104.0 78 64.1
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-20 103.6 78 62.8
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 1.2e-20 103.6 78 62.8
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.5e-20 103.2 78 62.8
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.5e-20 103.2 78 62.8
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 2.0e-20 102.8 75 61.3
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.6e-20 102.4 78 64.1
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 2.6e-20 102.4 78 62.8
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 3.4e-20 102.1 78 61.5
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.4e-20 102.1 75 65.3
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 5.8e-20 101.3 76 63.2
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 7.6e-20 100.9 78 60.3
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 7.6e-20 100.9 75 61.3
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 9.9e-20 100.5 78 60.3
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 2.9e-19 99.0 79 60.8
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 2.9e-19 99.0 79 60.8
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 3.8e-19 98.6 78 60.3
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 1.4e-18 96.7 78 60.3
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.4e-18 96.7 78 59.0
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 1.4e-18 96.7 78 59.0
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 1.4e-18 96.7 78 59.0
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.4e-18 96.7 78 59.0
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 1.9e-18 96.3 78 59.0
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 3.2e-18 95.5 78 56.4
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 4.2e-18 95.1 76 56.6
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 5.4e-18 94.7 78 60.3
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 7.1e-18 94.4 82 54.9
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 7.1e-18 94.4 73 61.6
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.6e-17 93.2 76 57.9
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.6e-17 93.2 79 59.5
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 1.6e-17 93.2 76 60.5
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 4.6e-17 91.7 75 61.3
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 7.8e-17 90.9 76 57.9
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.7e-16 89.7 78 55.1
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.9e-16 88.6 76 57.9
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.1e-15 87.0 61 68.9
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 7.3e-15 84.3 96 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 8.1e-14 80.9 81 50.6
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 2.4e-13 79.3 82 48.8
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 9.0e-13 77.4 56 64.3
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 1.7e-11 73.2 81 44.4
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 1.9e-10 69.7 81 42.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 2.1e-09 66.2 45 71.1
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 2.1e-09 66.2 45 71.1
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 2.7e-09 65.9 45 68.9
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 3.0e-08 62.4 78 41.0
QL03p069981 Quercus lobata HOM05D001252 ORTHO05D014384 3.6e-06 55.5 37 70.3


User provided reference genes

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