Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.0e-264 915.2 468 100.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 5.0e-223 777.7 474 84.4
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 3.2e-222 775.0 474 83.5
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 5.0e-207 724.5 471 80.3
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 8.6e-207 723.8 471 79.8
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.1e-205 719.2 471 77.7
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.8e-204 716.1 469 78.0
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 5.2e-204 714.5 488 77.3
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.4e-201 706.4 470 78.3
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.5e-198 695.7 485 75.5
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 9.5e-198 693.7 469 75.9
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.6e-197 691.8 469 75.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.0e-197 690.6 475 74.3
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.8e-196 689.5 474 74.5
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.3e-196 689.1 468 75.9
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 4.0e-196 688.3 470 75.7
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 8.9e-196 687.2 468 74.8
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 8.9e-196 687.2 470 76.4
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 4.4e-195 684.9 470 75.1
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 4.4e-195 684.9 470 75.1
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.3e-194 683.3 487 73.9
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 1.7e-194 682.9 487 73.7
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.7e-194 681.8 470 76.2
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 3.7e-194 681.8 472 75.4
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 4.9e-194 681.4 470 76.0
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 6.4e-194 681.0 469 76.1
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 2.4e-193 679.1 469 76.3
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 4.1e-193 678.3 473 73.2
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 7.0e-193 677.6 468 74.8
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.9e-190 669.5 460 74.3
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 5.6e-190 667.9 468 73.7
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 7.3e-190 667.5 468 73.7
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 9.5e-190 667.2 468 73.1
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 2.1e-189 666.0 476 72.9
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 4.7e-189 664.8 468 73.5
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 6.2e-189 664.5 504 69.4
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 6.8e-188 661.0 469 74.0
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 8.9e-188 660.6 469 71.6
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-187 660.2 469 71.6
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.0e-187 659.4 503 68.8
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.6e-187 659.1 480 72.7
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 5.8e-187 657.9 468 72.4
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.3e-186 656.8 471 71.5
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.3e-186 656.8 491 70.9
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.7e-186 656.4 491 70.9
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 1.7e-186 656.4 470 72.6
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 2.2e-186 656.0 478 72.8
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 4.9e-186 654.8 448 75.0
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.1e-185 653.7 514 69.6
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.4e-185 653.3 469 71.9
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 6.0e-184 647.9 472 72.0
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 6.0e-184 647.9 392 82.4
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.3e-183 646.7 482 70.7
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.7e-183 646.4 468 71.2
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 8.6e-183 644.0 468 72.9
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 8.6e-183 644.0 504 67.9
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 4.3e-182 641.7 468 70.9
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.1e-181 639.4 455 71.6
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 4.7e-181 638.3 469 71.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 6.2e-181 637.9 470 70.4
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 8.1e-181 637.5 472 70.8
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 8.1e-181 637.5 473 70.6
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.5e-179 633.3 473 70.2
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.5e-179 633.3 478 70.1
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 2.0e-179 632.9 545 62.9
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 4.4e-179 631.7 470 71.1
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 7.6e-179 630.9 409 78.5
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.9e-178 629.0 472 69.9
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.9e-178 628.2 460 71.5
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.4e-177 626.7 473 68.9
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 1.4e-177 626.7 473 69.6
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 4.2e-177 625.2 522 64.9
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 5.4e-177 624.8 471 68.8
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 1.2e-176 623.6 466 70.0
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-176 623.6 468 69.7
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-176 623.6 469 69.9
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-176 623.6 466 70.0
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.6e-176 623.2 470 70.2
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.1e-176 622.9 469 70.4
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.0e-175 620.5 468 68.8
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 1.7e-175 619.8 470 68.7
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.1e-174 617.1 468 68.2
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.5e-174 616.7 382 79.6
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 9.6e-174 614.0 481 66.9
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.3e-173 613.6 476 68.3
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.1e-173 612.8 469 69.5
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 4.8e-173 611.7 468 68.8
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.1e-172 610.5 469 68.4
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.1e-172 610.5 369 81.8
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.8e-172 609.8 468 69.7
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 5.3e-172 608.2 483 69.6
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 6.9e-172 607.8 468 68.8
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 9.0e-172 607.4 405 76.3
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.2e-171 607.1 480 68.8
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 2.6e-171 605.9 473 67.7
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 2.6e-171 605.9 430 73.5
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 9.9e-171 604.0 472 68.0
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 2.9e-170 602.4 444 72.1
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 4.6e-168 595.1 521 62.8
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 4.6e-168 595.1 471 68.2
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 7.8e-168 594.3 465 67.5
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.7e-167 593.2 474 67.3
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.3e-165 587.0 472 67.6
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.6e-165 585.5 481 64.9
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 3.1e-164 582.4 485 64.3
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 5.8e-163 578.2 470 66.6
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 5.8e-163 578.2 401 74.3
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 3.8e-162 575.5 476 64.9
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 4.9e-162 575.1 461 65.9
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 1.9e-161 573.2 484 64.5
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 5.4e-161 571.6 463 65.7
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 2.1e-160 569.7 493 62.5
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 3.5e-160 568.9 482 64.9
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 8.7e-159 564.3 333 83.5
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 3.3e-158 562.4 470 65.3
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 9.6e-158 560.8 470 65.1
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 2.4e-156 556.2 483 62.5
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 1.0e-154 550.8 497 61.0
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 3.9e-151 538.9 438 65.8
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 8.7e-151 537.7 440 66.1
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 1.6e-149 533.5 468 63.5
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.8e-148 530.0 469 63.1
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 3.4e-147 525.8 466 59.2
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 4.5e-147 525.4 515 59.8
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.1e-144 516.5 505 57.8
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 3.5e-144 515.8 279 87.8
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.8e-143 513.5 274 89.1
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.9e-139 498.4 437 61.3
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.3e-138 497.3 566 54.1
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.8e-138 495.7 426 64.8
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.5e-138 494.6 389 67.6
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.5e-137 493.0 337 70.3
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 9.4e-137 491.1 458 56.8
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 8.2e-133 478.0 334 71.9
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 1.1e-132 477.6 330 70.0
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.0e-126 456.8 446 58.5
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-124 451.1 349 66.8
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 7.2e-121 438.3 473 56.2
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 9.4e-121 438.0 269 74.7
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-118 431.0 439 56.9
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.9e-105 387.1 287 69.7
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.9e-105 387.1 390 55.4
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 2.4e-100 370.2 409 49.4
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 4.1e-100 369.4 337 55.8
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 7.3e-81 305.4 471 43.3
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.7e-74 284.3 260 55.8
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.6e-70 270.4 467 41.5
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.5e-54 218.0 381 37.0
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.7e-50 204.5 395 37.7
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.1e-44 185.3 247 47.8
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.0e-38 164.5 120 70.0
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.5e-36 156.4 192 50.5
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.4e-30 137.1 81 81.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.7e-29 134.8 134 54.5
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 9.0e-23 112.5 198 42.9
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.7e-21 108.2 114 52.6
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 2.9e-21 107.5 187 40.6
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 1.1e-20 105.5 106 52.8
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.6e-19 101.7 208 42.3
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 1.3e-08 65.5 205 24.9
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 4.5e-06 57.0 204 24.0


User provided reference genes

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