Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 8.2e-44 179.9 83 100.0
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.9e-41 171.4 81 97.5
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.1e-27 126.3 71 83.1
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.4e-27 125.2 71 83.1
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 8.8e-22 106.7 72 70.8
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 7.5e-21 103.6 72 66.7
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.1e-19 99.8 71 64.8
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 1.4e-19 99.4 71 66.2
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.8e-19 99.0 70 65.7
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.8e-19 99.0 72 66.7
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.8e-19 99.0 64 68.8
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 7.0e-19 97.1 70 64.3
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 1.6e-18 95.9 69 62.3
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 4.5e-18 94.4 68 64.7
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 5.9e-18 94.0 71 66.2
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.3e-17 92.8 70 62.9
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 3.8e-17 91.3 69 63.8
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.8e-17 91.3 72 58.3
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.5e-16 89.4 72 59.7
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 4.2e-16 87.8 71 59.2
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 4.2e-16 87.8 60 65.0
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 5.5e-16 87.4 63 66.7
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 5.5e-16 87.4 65 63.1
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.6e-15 85.9 63 61.9
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.1e-15 85.5 65 61.5
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.7e-15 85.1 62 66.1
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 3.6e-15 84.7 62 66.1
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 8.0e-15 83.6 81 51.9
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.0e-14 83.2 69 59.4
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 1.4e-14 82.8 58 63.8
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 1.8e-14 82.4 71 50.7
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 2.3e-14 82.0 64 54.7
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 3.0e-14 81.6 66 54.5
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 4.0e-14 81.3 65 60.0
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 6.8e-14 80.5 64 59.4
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.2e-13 79.7 70 54.3
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 1.5e-13 79.3 62 54.8
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.5e-13 79.3 62 54.8
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 2.6e-13 78.6 57 63.2
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.6e-13 78.6 73 50.7
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 3.4e-13 78.2 65 58.5
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 3.4e-13 78.2 64 57.8
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 4.4e-13 77.8 70 52.9
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 4.4e-13 77.8 64 54.7
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 7.5e-13 77.0 72 50.0
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 9.8e-13 76.6 65 55.4
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 9.8e-13 76.6 72 48.6
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 1.7e-12 75.9 72 50.0
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 2.8e-12 75.1 64 53.1
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.8e-12 75.1 64 53.1
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.8e-12 75.1 64 53.1
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.8e-12 75.1 64 53.1
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.8e-12 75.1 64 53.1
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.8e-12 75.1 69 49.3
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.8e-12 75.1 65 56.9
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 3.7e-12 74.7 65 50.8
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 4.8e-12 74.3 70 57.1
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 6.3e-12 73.9 71 45.1
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 8.3e-12 73.6 61 59.0
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.4e-11 72.8 71 47.9
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.4e-11 72.8 80 43.8
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.4e-11 72.8 64 53.1
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.4e-11 72.0 71 46.5
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 4.1e-11 71.2 64 46.9
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 4.1e-11 71.2 64 46.9
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 5.4e-11 70.9 64 53.1
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 7.0e-11 70.5 64 53.1
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 7.0e-11 70.5 65 53.8
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 9.1e-11 70.1 64 46.9
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 4.5e-10 67.8 68 44.1
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 4.5e-10 67.8 68 44.1
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 5.9e-10 67.4 59 45.8
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 5.9e-10 67.4 62 56.5
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 7.7e-10 67.0 68 45.6
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.0e-09 66.6 64 56.2
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.7e-09 65.9 56 53.6
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.7e-09 65.9 56 53.6
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.7e-09 65.9 59 44.1
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 2.2e-09 65.5 65 43.1
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.9e-09 65.1 65 44.6
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 2.9e-09 65.1 61 47.5
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.9e-09 65.1 65 49.2
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.9e-09 65.1 73 45.2
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.9e-09 65.1 73 45.2
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.8e-09 64.7 56 53.6
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 5.0e-09 64.3 59 42.4
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 5.0e-09 64.3 59 42.4
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 5.0e-09 64.3 59 42.4
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 6.5e-09 63.9 57 52.6
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 8.5e-09 63.5 60 40.0
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 8.5e-09 63.5 71 40.8
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.5e-08 62.8 59 49.2
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.5e-08 62.8 56 51.8
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.5e-08 62.8 56 51.8
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.5e-08 62.0 72 37.5
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.5e-08 62.0 57 52.6
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 2.5e-08 62.0 71 40.8
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 3.2e-08 61.6 62 45.2
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 7.2e-08 60.5 58 53.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.2e-07 59.7 72 36.1
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.6e-07 59.3 72 36.1
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.1e-07 58.9 66 43.9
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 2.7e-07 58.5 69 43.5
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.6e-07 58.2 66 42.4
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 4.7e-07 57.8 59 35.6
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 4.7e-07 57.8 59 47.5
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 8.0e-07 57.0 56 50.0
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 1.4e-06 56.2 62 45.2
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 3.0e-06 55.1 64 46.9
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 4.0e-06 54.7 64 45.3


User provided reference genes

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