Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p045741 Quercus lobata HOM05D000104 ORTHO05D004363 2.0e-132 475.7 231 100.0
QL09p044755 Quercus lobata HOM05D000104 ORTHO05D004363 1.4e-64 250.4 148 81.8
Haze_20464 Corylus avellana HOM05D000104 ORTHO05D004363 1.9e-58 229.9 148 76.4
Cfa017683 Carpinus fangiana HOM05D000104 ORTHO05D004363 2.8e-57 226.1 148 75.0
CiPaw.09G169600 Carya illinoinensis HOM05D000104 ORTHO05D004363 1.6e-41 173.7 164 56.1
Dinv37465 Davidia involucrata HOM05D000104 ORTHO05D004363 1.3e-35 154.1 148 54.7
Dinv09442 Davidia involucrata HOM05D000104 ORTHO05D004363 3.0e-35 152.9 143 54.5
Duzib128G0660 Durio zibethinus HOM05D000104 ORTHO05D004363 4.3e-34 149.1 149 49.0
Gohir.D13G165000 Gossypium hirsutum HOM05D000104 ORTHO05D004363 4.8e-33 145.6 149 48.3
Prupe.6G000100 Prunus persica HOM05D000104 ORTHO05D004363 4.8e-33 145.6 158 48.7
Gorai.013G197700 Gossypium raimondii HOM05D000104 ORTHO05D004363 6.2e-33 145.2 149 48.3
Thecc.05G236400 Theobroma cacao HOM05D000104 ORTHO05D004363 6.2e-33 145.2 149 49.7
Gohir.A13G159800 Gossypium hirsutum HOM05D000104 ORTHO05D004363 8.1e-33 144.8 149 48.3
Duzib177G0255 Durio zibethinus HOM05D000104 ORTHO05D004363 1.5e-31 140.6 149 49.0
Manes.08G155800 Manihot esculenta HOM05D000104 ORTHO05D004363 3.8e-30 136.0 150 46.7
COL.COLO4_33474 Corchorus olitorius HOM05D000104 ORTHO05D004363 1.9e-29 133.7 149 48.3
Atru.chr2.1616 Acer truncatum HOM05D000104 ORTHO05D004363 4.2e-29 132.5 150 48.0
Lalb_Chr01g0000141 Lupinus albus HOM05D000104 ORTHO05D004363 5.4e-29 132.1 151 48.3
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 1.6e-28 130.6 149 46.3
Medtr4g035100 Medicago truncatula HOM05D000104 ORTHO05D004363 3.5e-28 129.4 150 44.0
MD11G1000100 Malus domestica HOM05D000104 ORTHO05D004363 1.0e-27 127.9 149 48.3
Potri.013G068400 Populus trichocarpa HOM05D000104 ORTHO05D004363 5.1e-27 125.6 150 45.3
CSS0023365 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004363 8.7e-27 124.8 151 46.4
Glyma.12G002300 Glycine max HOM05D000104 ORTHO05D004363 1.1e-26 124.4 151 44.4
Ciclev10030472m.g Citrus clementina HOM05D000104 ORTHO05D004363 1.5e-26 124.0 149 45.0
Cpa.g.sc73.37 Carica papaya HOM05D000104 ORTHO05D004363 3.3e-26 122.9 149 46.3
RcHm_v2.0_Chr5g0084181 Rosa chinensis HOM05D000104 ORTHO05D004363 9.6e-26 121.3 149 47.7
Lj3g0018732 Lotus japonicus HOM05D000104 ORTHO05D004363 1.3e-25 120.9 151 43.0
arahy.Tifrunner.gnm1.ann1.64GWQS Arachis hypogaea HOM05D000104 ORTHO05D004363 3.7e-25 119.4 150 42.7
TWI32G0549 Tripterygium wilfordii HOM05D000104 ORTHO05D004363 3.7e-25 119.4 148 47.3
Phvul.011G002900 Phaseolus vulgaris HOM05D000104 ORTHO05D004363 3.1e-24 116.3 151 44.4
TPR.G31923 Trifolium pratense HOM05D000104 ORTHO05D004363 4.0e-24 115.9 151 41.7
Ca_19676_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004363 6.9e-24 115.2 151 41.1
Psat7g148080 Pisum sativum HOM05D000104 ORTHO05D004363 2.0e-23 113.6 151 39.7
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 3.4e-23 112.8 149 45.0
VMungo1127G2256 Vigna mungo HOM05D000104 ORTHO05D004363 5.8e-23 112.1 150 42.7
FAN21G1945 Fragaria x ananassa HOM05D000104 ORTHO05D004363 7.6e-23 111.7 149 44.3
Migut.A00510 Erythranthe guttata HOM05D000104 ORTHO05D004363 1.7e-22 110.5 148 41.2
Glyma.09G234400 Glycine max HOM05D000104 ORTHO05D004363 2.9e-22 109.8 151 41.1
Sabra13G0059700 Salix brachista HOM05D000104 ORTHO05D004363 2.9e-22 109.8 150 41.3
FvH4_3g46101 Fragaria vesca HOM05D000104 ORTHO05D004363 1.4e-21 107.5 149 43.6
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 2.5e-21 106.7 150 43.3
Eucgr.D01125 Eucalyptus grandis HOM05D000104 ORTHO05D004363 3.2e-21 106.3 148 37.2
vmacro00211 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 5.5e-21 105.5 149 40.3
Cc11_g04400 Coffea canephora HOM05D000104 ORTHO05D004363 2.7e-20 103.2 155 40.0
SalBow4G3014 Salvia bowleyana HOM05D000104 ORTHO05D004363 7.9e-20 101.7 149 40.3
Peaxi162Scf00213g01732 Petunia axillaris HOM05D000104 ORTHO05D004363 1.3e-19 100.9 153 44.4
Nitab4.5_0023622g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 1.5e-18 97.4 152 42.8
Oeu026040.2 Olea europaea HOM05D000104 ORTHO05D004363 3.3e-18 96.3 148 37.2
ECA240G3782 Erigeron canadensis HOM05D000104 ORTHO05D004363 7.4e-18 95.1 149 36.2
HanXRQChr03g0082351 Helianthus annuus HOM05D000104 ORTHO05D004363 1.3e-17 94.4 181 37.6
CAN.G195.24 Capsicum annuum HOM05D000104 ORTHO05D004363 2.1e-17 93.6 152 42.1
AT3G54280 Arabidopsis thaliana HOM05D000104 ORTHO05D004363 1.1e-16 91.3 149 38.9
Carub.0005s2087 Capsella rubella HOM05D000104 ORTHO05D004363 1.1e-16 91.3 179 35.8
AL5G35320 Arabidopsis lyrata HOM05D000104 ORTHO05D004363 1.8e-16 90.5 149 39.6
BcaC02g09076 Brassica carinata HOM05D000104 ORTHO05D004363 3.1e-16 89.7 153 38.6
C04p38160 Brassica napus HOM05D000104 ORTHO05D004363 3.1e-16 89.7 153 38.6
Solyc08g074520.2 Solanum lycopersicum HOM05D000104 ORTHO05D004363 3.1e-16 89.7 152 40.1
Sopen08g023150 Solanum pennellii HOM05D000104 ORTHO05D004363 3.1e-16 89.7 152 40.1
Actinidia03314 Actinidia chinensis HOM05D000104 ORTHO05D004363 4.0e-16 89.4 107 48.6
A09p47280 Brassica napus HOM05D000104 ORTHO05D004363 4.0e-16 89.4 151 39.1
BraA09t40189Z Brassica rapa HOM05D000104 ORTHO05D004363 4.0e-16 89.4 151 39.1
C08p29510 Brassica napus HOM05D000104 ORTHO05D004363 1.2e-15 87.8 151 39.1
BolC8t50557H Brassica oleracea HOM05D000104 ORTHO05D004363 1.2e-15 87.8 151 39.1
Sp5g08110 Schrenkiella parvula HOM05D000104 ORTHO05D004363 2.0e-15 87.0 152 38.2
Aa31sc392G40 Aethionema arabicum HOM05D000104 ORTHO05D004363 4.5e-15 85.9 149 38.9
CARHR164200 Cardamine hirsuta HOM05D000104 ORTHO05D004363 1.3e-14 84.3 150 36.7
BolC4t25391H Brassica oleracea HOM05D000104 ORTHO05D004363 4.9e-14 82.4 153 37.3
SGA_v2.0_scaffold27G11711 Striga asiatica HOM05D000104 ORTHO05D004363 4.9e-14 82.4 147 36.7
CANSAT35G1590 Cannabis sativa HOM05D000104 ORTHO05D004363 6.5e-14 82.0 173 32.4
CsaV3_3G021040 Cucumis sativus L. HOM05D000104 ORTHO05D004363 6.5e-14 82.0 148 37.8
CsaV3_4G017740 Cucumis sativus L. HOM05D000104 ORTHO05D004363 6.5e-14 82.0 148 37.8
MELO3C020235.2 Cucumis melo HOM05D000104 ORTHO05D004363 8.4e-14 81.6 148 37.8
THA.LOC104819143 Tarenaya hassleriana HOM05D000104 ORTHO05D004363 1.1e-13 81.3 180 33.3
ATR0665G650 Amborella trichopoda HOM05D000104 ORTHO05D004363 1.9e-13 80.5 156 34.6
Thhalv10010052m.g Eutrema salsugineum HOM05D000104 ORTHO05D004363 2.5e-13 80.1 150 35.3
SGA_v2.0_scaffold269G46291 Striga asiatica HOM05D000104 ORTHO05D004363 2.5e-13 80.1 147 35.4
HPP92_015726 Vanilla planifolia HOM05D000104 ORTHO05D004363 3.2e-13 79.7 154 33.1
MSTRG.11830 Avicennia marina HOM05D000104 ORTHO05D004363 4.2e-13 79.3 148 38.5
ClCG05G011380 Citrullus lanatus HOM05D000104 ORTHO05D004363 5.5e-13 79.0 148 35.8
Lsat_1_v5_gn_5_59321 Lactuca sativa HOM05D000104 ORTHO05D004363 8.7e-11 71.6 148 31.8
PSO832G0838 Papaver somniferum HOM05D000104 ORTHO05D004363 1.9e-10 70.5 149 30.9
Sed0011777 Sechium edule HOM05D000104 ORTHO05D004363 1.3e-09 67.8 151 32.5
Sc05g0007890 Simmondsia chinensis HOM05D000104 ORTHO05D004363 1.3e-09 67.8 148 30.4
Nn3g17003 Nelumbo nucifera HOM05D000104 ORTHO05D004363 1.6e-09 67.4 148 33.1
unitig_92.g28135 Utricularia gibba HOM05D000104 ORTHO05D004363 2.4e-08 63.5 149 34.2
HanXRQChr16g0510321 Helianthus annuus HOM05D000104 ORTHO05D004363 4.1e-08 62.8 101 38.6
PGR083G0814 Punica granatum HOM05D000104 ORTHO05D004363 6.9e-08 62.0 142 32.4
AUR62016963 Chenopodium quinoa HOM05D000104 ORTHO05D004363 2.0e-07 60.5 153 30.7
AUR62014777 Chenopodium quinoa HOM05D000104 ORTHO05D004363 4.5e-07 59.3 157 31.2
Aqoxy7G00075 Aquilegia oxysepala HOM05D000104 ORTHO05D004363 5.9e-07 58.9 193 23.8
unitig_93.g30710 Utricularia gibba HOM05D000104 ORTHO05D004363 1.0e-06 58.2 140 34.3


User provided reference genes

Program Settings