Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p038954 Quercus lobata HOM05D004102 ORTHO05D005307 1.9e-54 215.7 118 100.0
SHI09770 Sapria himalayana HOM05D004102 ORTHO05D005307 1.0e-23 113.6 103 65.0
BolC3t17695H Brassica oleracea HOM05D004102 ORTHO05D005307 2.1e-21 105.9 104 57.7
COL.COLO4_03878 Corchorus olitorius HOM05D004102 ORTHO05D005307 1.4e-20 103.2 116 52.6
COL.COLO4_04038 Corchorus olitorius HOM05D004102 ORTHO05D005307 1.4e-20 103.2 116 52.6
CDE03G0492 Ceratophyllum demersum HOM05D004102 ORTHO05D005307 2.4e-20 102.4 104 55.8
QL09p038899 Quercus lobata HOM05D004102 ORTHO05D005307 9.0e-20 100.5 66 83.3
Lsat_1_v5_gn_8_92740 Lactuca sativa HOM05D004102 ORTHO05D005307 2.2e-18 95.9 104 56.7
Carub.0005s2127 Capsella rubella HOM05D004102 ORTHO05D005307 3.8e-18 95.1 104 54.8
Duzib133G0778 Durio zibethinus HOM05D004102 ORTHO05D005307 6.4e-18 94.4 84 59.5
Nitab4.5_0000470g0060 Nicotiana tabacum HOM05D004102 ORTHO05D005307 1.4e-17 93.2 103 56.3
Nitab4.5_0006457g0030 Nicotiana tabacum HOM05D004102 ORTHO05D005307 2.4e-17 92.4 103 56.3
Duzib138G0514 Durio zibethinus HOM05D004102 ORTHO05D005307 4.2e-17 91.7 69 69.6
Gohir.A07G213150 Gossypium hirsutum HOM05D004102 ORTHO05D005307 1.2e-16 90.1 68 70.6
Gohir.A07G213200 Gossypium hirsutum HOM05D004102 ORTHO05D005307 1.2e-16 90.1 68 70.6
Gohir.D07G219350 Gossypium hirsutum HOM05D004102 ORTHO05D005307 1.2e-16 90.1 68 70.6
Gorai.001G253800 Gossypium raimondii HOM05D004102 ORTHO05D005307 1.2e-16 90.1 68 70.6
HanXRQChr02g0038071 Helianthus annuus HOM05D004102 ORTHO05D005307 1.2e-16 90.1 104 52.9
A03p43760 Brassica napus HOM05D004102 ORTHO05D005307 2.1e-16 89.4 105 52.4
BraA03t13511Z Brassica rapa HOM05D004102 ORTHO05D005307 2.1e-16 89.4 105 52.4
Rhsim13G0035400 Rhododendron simsii HOM05D004102 ORTHO05D005307 6.0e-16 87.8 105 51.4
SEGI_02214 Sequoiadendron giganteum HOM05D004102 ORTHO05D005307 1.0e-15 87.0 104 50.0
C04p37830 Brassica napus HOM05D004102 ORTHO05D005307 1.3e-15 86.7 104 51.0
BolC4t25359H Brassica oleracea HOM05D004102 ORTHO05D005307 1.3e-15 86.7 104 51.0
Psat6g041920 Pisum sativum HOM05D004102 ORTHO05D005307 1.3e-15 86.7 70 65.7
AagrBONN_evm.TU.Sc2ySwM_344.1414__1415 Anthoceros agrestis HOM05D004102 ORTHO05D005307 1.8e-15 86.3 104 44.2
Manes.12G032800 Manihot esculenta HOM05D004102 ORTHO05D005307 1.8e-15 86.3 62 72.6
MD05G1196500 Malus domestica HOM05D004102 ORTHO05D005307 2.3e-15 85.9 55 83.6
Ca_09679_v3 Cicer arietinum L. HOM05D004102 ORTHO05D005307 5.1e-15 84.7 58 77.6
MD10G1183700 Malus domestica HOM05D004102 ORTHO05D005307 5.1e-15 84.7 55 81.8
CANSAT01G2283 Cannabis sativa HOM05D004102 ORTHO05D005307 6.7e-15 84.3 60 75.0
CiPaw.03G264900 Carya illinoinensis HOM05D004102 ORTHO05D005307 6.7e-15 84.3 57 75.4
Prupe.8G223100 Prunus persica HOM05D004102 ORTHO05D005307 6.7e-15 84.3 105 51.4
Thecc.01G257700 Theobroma cacao HOM05D004102 ORTHO05D005307 6.7e-15 84.3 58 75.9
Medtr1g069910 Medicago truncatula HOM05D004102 ORTHO05D005307 8.7e-15 84.0 58 77.6
Nn3g19665 Nelumbo nucifera HOM05D004102 ORTHO05D005307 8.7e-15 84.0 58 75.9
Pp3c12_10030 Physcomitrium patens HOM05D004102 ORTHO05D005307 8.7e-15 84.0 104 46.2
Hma1.2p1_0273F.1_g109650 Hydrangea macrophylla HOM05D004102 ORTHO05D005307 1.1e-14 83.6 76 61.8
Mapoly0107s0024 Marchantia polymorpha HOM05D004102 ORTHO05D005307 1.1e-14 83.6 104 43.3
Atru.chr5.1694 Acer truncatum HOM05D004102 ORTHO05D005307 1.9e-14 82.8 69 62.3
Cfa002432 Carpinus fangiana HOM05D004102 ORTHO05D005307 1.9e-14 82.8 58 74.1
TAR362G0337 Trochodendron aralioides HOM05D004102 ORTHO05D005307 1.9e-14 82.8 58 74.1
ATR0827G146 Amborella trichopoda HOM05D004102 ORTHO05D005307 2.5e-14 82.4 69 66.7
CARHR164590 Cardamine hirsuta HOM05D004102 ORTHO05D005307 2.5e-14 82.4 104 49.0
ECA236G1622 Erigeron canadensis HOM05D004102 ORTHO05D005307 2.5e-14 82.4 58 75.9
Medtr1g059520 Medicago truncatula HOM05D004102 ORTHO05D005307 2.5e-14 82.4 65 64.6
TPR.G24001 Trifolium pratense HOM05D004102 ORTHO05D005307 2.5e-14 82.4 58 75.9
Lj5g0004279 Lotus japonicus HOM05D004102 ORTHO05D005307 3.3e-14 82.0 58 74.1
Solyc06g083870.3 Solanum lycopersicum HOM05D004102 ORTHO05D005307 3.3e-14 82.0 76 59.2
Sopen06g035270 Solanum pennellii HOM05D004102 ORTHO05D005307 3.3e-14 82.0 76 59.2
Actinidia07299 Actinidia chinensis HOM05D004102 ORTHO05D005307 4.3e-14 81.6 69 63.8
Cpa.g.sc50.12 Carica papaya HOM05D004102 ORTHO05D005307 4.3e-14 81.6 58 70.7
Medtr0003s0460 Medicago truncatula HOM05D004102 ORTHO05D005307 4.3e-14 81.6 57 75.4
vmacro02666 Vaccinium macrocarpon HOM05D004102 ORTHO05D005307 4.3e-14 81.6 71 63.4
Glyma.13G123700 Glycine max HOM05D004102 ORTHO05D005307 5.6e-14 81.3 55 76.4
Lj2g0002321 Lotus japonicus HOM05D004102 ORTHO05D005307 5.6e-14 81.3 58 72.4
Lalb_Chr06g0170461 Lupinus albus HOM05D004102 ORTHO05D005307 5.6e-14 81.3 53 79.2
THA.LOC104798817 Tarenaya hassleriana HOM05D004102 ORTHO05D005307 5.6e-14 81.3 58 74.1
Cc01_g18300 Coffea canephora HOM05D004102 ORTHO05D005307 1.3e-13 80.1 71 60.6
Phvul.007G192600 Phaseolus vulgaris HOM05D004102 ORTHO05D005307 1.3e-13 80.1 53 77.4
Glyma.10G037300 Glycine max HOM05D004102 ORTHO05D005307 1.6e-13 79.7 53 77.4
CSS0001085 Camellia sinensis var. sinensis HOM05D004102 ORTHO05D005307 2.1e-13 79.3 52 78.8
MBI07_g16928_MAGBIO Magnolia biondii HOM05D004102 ORTHO05D005307 2.1e-13 79.3 56 73.2
RcHm_v2.0_Chr6g0287971 Rosa chinensis HOM05D004102 ORTHO05D005307 2.1e-13 79.3 57 75.4
Sed0028046 Sechium edule HOM05D004102 ORTHO05D005307 2.1e-13 79.3 58 72.4
Haze_24638 Corylus avellana HOM05D004102 ORTHO05D005307 2.8e-13 79.0 57 71.9
AL5G35750 Arabidopsis lyrata HOM05D004102 ORTHO05D005307 3.7e-13 78.6 104 49.0
C08p29820 Brassica napus HOM05D004102 ORTHO05D005307 3.7e-13 78.6 104 48.1
BolC8t50593H Brassica oleracea HOM05D004102 ORTHO05D005307 3.7e-13 78.6 104 48.1
Eucgr.B01550 Eucalyptus grandis HOM05D004102 ORTHO05D005307 3.7e-13 78.6 57 71.9
TWI18G1245 Tripterygium wilfordii HOM05D004102 ORTHO05D005307 3.7e-13 78.6 57 73.7
CAN.G771.28 Capsicum annuum HOM05D004102 ORTHO05D005307 4.8e-13 78.2 104 47.1
FvH4_2g21371 Fragaria vesca HOM05D004102 ORTHO05D005307 4.8e-13 78.2 57 73.7
FAN15G3235 Fragaria x ananassa HOM05D004102 ORTHO05D005307 4.8e-13 78.2 57 73.7
FAN20G2335 Fragaria x ananassa HOM05D004102 ORTHO05D005307 4.8e-13 78.2 54 77.8
FAN24G0573 Fragaria x ananassa HOM05D004102 ORTHO05D005307 4.8e-13 78.2 57 73.7
Aqoxy5G00226 Aquilegia oxysepala HOM05D004102 ORTHO05D005307 6.2e-13 77.8 58 67.2
ClCG09G008240 Citrullus lanatus HOM05D004102 ORTHO05D005307 6.2e-13 77.8 55 74.5
MELO3C012730.2 Cucumis melo HOM05D004102 ORTHO05D005307 6.2e-13 77.8 55 74.5
CsaV3_7G026800 Cucumis sativus L. HOM05D004102 ORTHO05D005307 6.2e-13 77.8 55 74.5
DCAR_005687 Daucus carota HOM05D004102 ORTHO05D005307 6.2e-13 77.8 104 47.1
Ciclev10024065m.g Citrus clementina HOM05D004102 ORTHO05D005307 1.1e-12 77.0 53 71.7
Lj1A67T41 Lonicera japonica HOM05D004102 ORTHO05D005307 1.1e-12 77.0 56 71.4
Sabra05G0173500 Salix brachista HOM05D004102 ORTHO05D005307 1.4e-12 76.6 64 67.2
Sp5g07780 Schrenkiella parvula HOM05D004102 ORTHO05D005307 1.4e-12 76.6 104 47.1
CBR_g38548 Chara braunii HOM05D004102 ORTHO05D005307 1.8e-12 76.3 103 43.7
AT3G54670 Arabidopsis thaliana HOM05D004102 ORTHO05D005307 2.4e-12 75.9 104 47.1
arahy.Tifrunner.gnm1.ann1.3W1S0R Arachis hypogaea HOM05D004102 ORTHO05D005307 3.1e-12 75.5 58 69.0
A09p47620 Brassica napus HOM05D004102 ORTHO05D005307 3.1e-12 75.5 104 46.2
BraA09t40218Z Brassica rapa HOM05D004102 ORTHO05D005307 3.1e-12 75.5 104 46.2
Potri.005G224900 Populus trichocarpa HOM05D004102 ORTHO05D005307 3.1e-12 75.5 57 68.4
Aa31sc35G50 Aethionema arabicum HOM05D004102 ORTHO05D005307 4.0e-12 75.1 104 48.1
Dinv34632 Davidia involucrata HOM05D004102 ORTHO05D005307 6.9e-12 74.3 55 70.9
Peaxi162Scf00013g01122 Petunia axillaris HOM05D004102 ORTHO05D005307 6.9e-12 74.3 104 45.2
Oeu025851.5 Olea europaea HOM05D004102 ORTHO05D005307 9.0e-12 73.9 107 46.7
C03p53990 Brassica napus HOM05D004102 ORTHO05D005307 1.5e-11 73.2 106 46.2
PGR031G2496 Punica granatum HOM05D004102 ORTHO05D005307 1.5e-11 73.2 53 69.8
arahy.Tifrunner.gnm1.ann1.KRWI3G Arachis hypogaea HOM05D004102 ORTHO05D005307 2.6e-11 72.4 53 71.7
MSTRG.12532 Avicennia marina HOM05D004102 ORTHO05D005307 2.6e-11 72.4 66 59.1
Thhalv10010074m.g Eutrema salsugineum HOM05D004102 ORTHO05D005307 5.8e-11 71.2 104 45.2
Sc17g0000640 Simmondsia chinensis HOM05D004102 ORTHO05D005307 9.9e-11 70.5 55 61.8
Zm00001eb038490 Zea mays HOM05D004102 ORTHO05D005307 1.7e-10 69.7 58 62.1
PSO210G1261 Papaver somniferum HOM05D004102 ORTHO05D005307 2.9e-10 68.9 55 67.3
PSO832G3143 Papaver somniferum HOM05D004102 ORTHO05D005307 2.9e-10 68.9 55 67.3
Migut.N02206 Erythranthe guttata HOM05D004102 ORTHO05D005307 3.8e-10 68.6 76 48.7
PRCOL_00005438 Prasinoderma coloniale HOM05D004102 ORTHO05D005307 3.8e-10 68.6 99 41.4
Peaxi162Scf00855g00004 Petunia axillaris HOM05D004102 ORTHO05D005307 1.4e-09 66.6 101 45.5
SGA_v2.0_scaffold2G00877 Striga asiatica HOM05D004102 ORTHO05D005307 1.4e-09 66.6 53 62.3
AUR62024710 Chenopodium quinoa HOM05D004102 ORTHO05D005307 1.9e-09 66.2 72 48.6
Lsat_1_v5_gn_4_2320 Lactuca sativa HOM05D004102 ORTHO05D005307 5.5e-09 64.7 100 43.0
AUR62011867 Chenopodium quinoa HOM05D004102 ORTHO05D005307 1.6e-08 63.2 67 50.7
unitig_37.g12599 Utricularia gibba HOM05D001236 ORTHO05D005307 3.5e-08 62.0 69 52.2
EL10Ac8g19733 Beta vulgaris HOM05D004102 ORTHO05D005307 8.7e-07 57.4 73 45.2
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 8.7e-07 57.4 55 56.4
HPP92_014764 Vanilla planifolia HOM05D004102 ORTHO05D005307 1.5e-06 56.6 80 48.8
Ah.11g049770 Amaranthus hybridus HOM05D004102 ORTHO05D005307 2.5e-06 55.8 53 58.5
EL10As5g23471 Beta vulgaris HOM05D004102 ORTHO05D005307 2.5e-06 55.8 53 56.6


User provided reference genes

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