Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1756.9 861 100.0
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1382.5 911 77.3
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1360.5 842 80.9
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1330.9 862 77.4
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1329.3 895 74.6
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1325.5 873 75.7
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1313.5 860 77.1
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1307.4 855 76.8
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1281.9 862 75.3
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1280.4 884 74.5
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1277.7 862 75.3
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1275.8 873 74.8
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1273.5 862 75.2
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1270.4 868 74.0
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1269.6 866 74.4
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1267.7 866 75.6
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1267.7 868 73.4
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1263.8 862 73.4
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1262.3 863 73.7
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1260.7 867 73.2
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1257.3 898 71.8
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1256.1 871 74.3
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1251.5 893 71.8
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1247.6 877 72.7
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1243.8 833 74.7
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1240.3 890 71.3
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1235.3 868 72.8
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1235.3 890 71.0
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1229.2 862 71.7
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1225.7 862 72.4
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1225.3 895 71.1
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1221.8 875 71.9
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1221.8 891 70.0
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1221.5 863 72.5
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1221.1 862 72.0
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1217.2 881 70.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1215.3 871 72.1
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1212.6 869 71.2
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1211.8 873 71.5
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1211.4 860 72.8
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1209.5 866 71.4
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1209.5 891 69.7
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1209.1 870 71.5
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1208.4 898 69.9
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1205.7 915 68.3
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1205.7 865 70.3
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1203.7 858 71.3
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1203.3 867 70.9
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1200.3 915 67.9
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1200.3 861 71.2
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1199.5 891 69.2
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1198.0 863 71.1
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1194.9 871 70.1
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1193.7 894 68.2
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1191.4 871 69.1
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 876 71.1
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 861 72.1
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1186.8 869 69.3
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1181.0 877 70.8
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1178.7 864 69.2
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1175.2 862 70.3
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1172.9 875 70.7
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1170.6 938 65.0
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1169.5 866 71.1
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1161.4 864 68.4
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1159.4 864 68.1
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1155.2 867 67.7
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1151.7 877 67.4
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1150.2 875 67.5
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1149.4 896 67.2
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1148.7 884 68.1
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1144.8 871 66.6
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1142.1 883 66.6
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1140.2 874 67.0
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 879 66.3
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1138.6 903 65.2
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1138.3 866 69.1
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1137.1 861 68.5
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1134.4 861 68.5
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1134.0 863 65.9
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1130.9 862 66.9
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1127.1 903 64.2
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1125.5 903 64.1
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1120.9 868 65.9
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1112.8 893 64.5
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1110.9 870 66.4
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1110.5 868 67.1
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1107.4 868 67.4
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1099.3 881 66.9
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1099.0 863 65.8
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1099.0 880 66.7
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1094.7 754 72.8
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1093.6 870 66.2
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1085.9 885 65.6
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1085.1 866 65.4
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1085.1 860 65.9
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1082.8 896 63.1
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1081.2 874 66.9
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1080.5 879 65.4
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1077.0 872 66.4
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 2.9e-311 1071.6 875 64.8
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 2.9e-311 1071.6 879 65.3
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 2.9e-311 1071.6 877 65.1
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 2.0e-310 1068.9 884 66.0
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 3.4e-310 1068.1 877 65.0
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.3e-309 1066.2 878 65.3
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 1.3e-309 1066.2 866 65.0
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 3.8e-309 1064.7 861 64.3
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 8.4e-309 1063.5 883 64.4
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 1.9e-308 1062.4 865 64.6
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 1.6e-307 1059.3 908 62.3
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 8.7e-306 1053.5 858 63.9
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 1.5e-305 1052.7 884 63.9
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 2.5e-305 1052.0 947 59.5
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 8.1e-304 1047.0 867 62.9
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 2.4e-303 1045.4 813 67.3
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.1e-297 1026.5 884 61.1
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 1.9e-297 1025.8 789 67.9
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 3.4e-294 1015.0 907 61.1
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 3.8e-293 1011.5 833 65.5
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.6e-288 996.1 849 61.7
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 5.3e-287 991.1 859 61.2
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 4.5e-286 988.0 953 56.6
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.0e-282 976.9 831 64.6
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 6.7e-282 974.2 907 58.4
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.3e-281 971.5 878 61.3
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 5.3e-279 964.5 905 57.9
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.6e-267 926.4 603 76.8
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.2e-261 906.0 824 58.4
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 6.5e-261 904.4 590 75.6
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.2e-259 900.2 567 80.6
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 8.0e-259 897.5 880 55.8
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.1e-251 872.8 881 53.6
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.8e-248 862.4 810 56.7
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 1.1e-247 860.5 909 54.1
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 4.5e-246 855.1 871 53.7
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 8.0e-243 844.3 905 51.6
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.8e-239 833.2 831 54.0
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 4.1e-239 832.0 862 53.2
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.9e-237 825.9 796 56.4
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.7e-229 800.0 816 53.6
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.4e-225 785.8 613 64.1
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 3.2e-199 699.5 572 60.5
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.0e-197 693.0 863 46.2
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 8.1e-195 684.9 863 43.7
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.9e-188 663.7 589 54.8
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.2e-182 644.4 636 56.4
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 4.8e-179 632.5 636 55.7
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 3.9e-173 612.8 614 49.7
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 3.0e-165 586.6 580 56.0
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 1.3e-163 581.3 888 41.4
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 5.7e-148 529.3 511 56.2
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.2e-142 511.5 446 61.2
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 3.0e-133 480.3 571 44.8
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 1.9e-111 407.9 638 36.5
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.1e-110 404.4 464 49.6
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 2.9e-99 367.5 402 53.7
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.7e-96 358.2 502 42.0
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.8e-93 348.2 265 66.4
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 3.4e-92 344.0 696 31.6
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 4.2e-82 310.5 225 62.7
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.2e-76 292.4 265 58.9
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 1.0e-72 279.3 175 74.3
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 6.9e-61 240.0 555 28.8
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 6.1e-57 226.9 157 70.7
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 3.3e-55 221.1 502 29.7
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 3.7e-38 164.5 366 35.0
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 5.0e-35 154.1 189 50.8
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 1.3e-22 112.8 355 28.7
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.6e-20 105.9 73 64.4
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 4.2e-18 97.8 181 37.0
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 8.0e-17 93.6 74 62.2
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 6.8e-16 90.5 123 47.2
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 5.2e-08 64.3 52 59.6


User provided reference genes

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