Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 2.0e-181 639.0 329 100.0
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 9.5e-152 540.4 329 84.8
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 2.6e-149 532.3 329 82.7
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 6.6e-121 438.0 311 73.0
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.5e-117 426.8 315 69.8
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 2.0e-117 426.4 311 72.7
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 2.2e-116 422.9 328 67.1
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.8e-116 422.2 315 69.5
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.1e-115 420.6 327 67.6
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 4.1e-115 418.7 325 68.0
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 4.1e-115 418.7 312 69.9
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 5.4e-115 418.3 316 68.4
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 7.1e-115 417.9 312 71.8
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 3.5e-114 415.6 311 70.1
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 6.0e-114 414.8 311 70.4
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 7.8e-114 414.5 312 71.8
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.3e-113 413.7 328 68.3
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 3.0e-113 412.5 315 68.6
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 3.9e-113 412.1 311 68.8
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.1e-113 411.8 315 68.6
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 6.6e-113 411.4 311 69.5
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.1e-112 410.6 312 68.9
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.1e-112 410.6 315 68.3
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 4.3e-112 408.7 315 69.5
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 5.6e-112 408.3 312 69.2
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.2e-111 407.1 311 68.8
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.6e-111 406.8 315 69.8
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 1.6e-111 406.8 319 66.5
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.1e-111 406.4 311 69.1
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 2.8e-111 406.0 312 68.9
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 4.0e-110 402.1 310 66.5
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 5.2e-110 401.7 313 66.8
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 5.2e-110 401.7 310 66.8
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 1.5e-109 400.2 314 69.1
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 4.4e-109 398.7 310 66.5
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 9.9e-109 397.5 321 66.4
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 2.2e-108 396.4 325 65.5
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.2e-108 396.4 311 67.5
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 2.2e-108 396.4 310 66.8
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 2.9e-108 396.0 298 68.8
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 2.9e-108 396.0 315 67.0
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 3.2e-107 392.5 311 65.3
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 7.1e-107 391.3 312 68.6
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.6e-106 390.2 367 60.2
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 1.6e-106 390.2 309 65.0
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 1.6e-106 390.2 310 65.8
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 6.0e-106 388.3 311 65.9
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 6.0e-106 388.3 311 65.9
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 7.8e-106 387.9 314 65.9
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 1.3e-105 387.1 309 65.0
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 2.3e-105 386.3 311 66.2
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.3e-105 386.3 321 62.6
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 6.6e-105 384.8 316 65.8
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 2.5e-104 382.9 373 56.8
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 4.3e-104 382.1 295 67.1
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 1.3e-103 380.6 309 64.4
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 1.4e-102 377.1 315 62.9
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 5.3e-102 375.2 310 66.1
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 3.4e-101 372.5 319 61.1
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 7.6e-101 371.3 325 62.2
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 9.9e-101 370.9 303 67.0
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.3e-100 370.5 329 59.3
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.1e-99 367.5 311 65.0
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 1.4e-99 367.1 310 63.9
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 4.2e-99 365.5 322 61.2
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 9.3e-99 364.4 312 61.9
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 2.7e-98 362.8 361 57.9
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 3.5e-98 362.5 323 61.0
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.9e-96 356.7 310 62.3
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 3.3e-96 355.9 311 63.0
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 4.3e-96 355.5 335 60.0
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 7.4e-96 354.8 313 60.7
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 9.6e-96 354.4 315 59.4
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.6e-95 353.6 340 57.1
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.6e-95 353.6 350 57.4
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 4.8e-95 352.1 313 61.3
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 6.2e-95 351.7 299 63.5
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 8.1e-95 351.3 311 62.1
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 8.1e-95 351.3 312 61.9
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.4e-94 350.5 313 61.7
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 1.8e-94 350.1 315 61.6
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 2.4e-94 349.7 327 59.6
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 5.3e-94 348.6 312 62.2
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 5.3e-94 348.6 311 59.5
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 9.0e-94 347.8 315 60.6
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.2e-93 347.4 316 58.9
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.2e-93 347.4 313 61.0
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 9.9e-93 344.4 314 59.9
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.3e-92 344.0 313 60.4
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.3e-92 344.0 313 60.7
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.3e-92 344.0 313 60.4
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.3e-92 344.0 313 60.4
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.3e-92 344.0 313 60.7
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 2.9e-92 342.8 314 59.6
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.1e-91 340.9 311 59.2
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.9e-91 340.1 311 59.2
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 2.4e-91 339.7 311 59.5
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 4.2e-91 339.0 315 56.8
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 1.2e-90 337.4 314 59.2
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 1.6e-90 337.0 313 58.8
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 3.7e-87 325.9 256 66.8
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.7e-84 317.0 310 56.5
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.7e-84 317.0 266 62.8
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.9e-84 315.5 317 57.4
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.0e-81 307.8 312 56.1
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 4.1e-78 295.8 261 60.5
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 5.9e-77 292.0 312 54.2
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 2.9e-76 289.7 206 73.8
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.5e-75 286.6 351 51.9
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 2.1e-74 283.5 321 51.4
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 9.7e-72 274.6 209 71.3
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.3e-68 264.2 311 50.5
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 2.7e-66 256.5 317 50.2
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 4.4e-64 249.2 267 51.7
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.3e-63 247.7 298 49.0
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 1.4e-62 244.2 310 45.2
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 4.2e-59 232.6 311 45.0
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 7.2e-51 205.3 311 41.8
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 6.3e-47 192.2 110 91.8
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 2.4e-46 190.3 203 48.3
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 3.6e-42 176.4 169 56.8
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 8.0e-42 175.3 111 78.4
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.5e-40 171.0 260 43.5
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 9.1e-38 161.8 173 48.0
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 3.5e-37 159.8 110 74.5
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 6.6e-36 155.6 154 57.8
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 9.5e-35 151.8 105 73.3
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 7.3e-27 125.6 82 80.5
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 8.9e-25 118.6 194 39.7
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.9e-23 113.6 100 60.0
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 5.2e-17 92.8 102 48.0
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.6e-16 90.5 94 56.4
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 7.5e-16 89.0 73 65.8
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 2.9e-15 87.0 46 93.5
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 2.9e-15 87.0 46 93.5
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 2.9e-15 87.0 46 93.5
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 4.1e-14 83.2 67 64.2
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 4.1e-14 83.2 45 91.1
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 5.4e-14 82.8 54 77.8
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 3.0e-12 77.0 54 70.4
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 4.0e-09 66.6 53 62.3
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 2.0e-08 64.3 46 73.9
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 2.2e-07 60.8 79 40.5
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.1e-06 58.5 121 33.1
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 2.4e-06 57.4 36 75.0


User provided reference genes

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