Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 8.5e-148 526.9 260 100.0
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 5.6e-107 391.3 255 78.0
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 2.0e-104 382.9 254 76.8
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 2.4e-102 375.9 254 73.2
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 5.4e-102 374.8 215 83.7
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 9.3e-102 374.0 215 83.3
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 1.2e-101 373.6 261 70.9
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.5e-101 372.1 215 82.8
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 2.5e-99 365.9 254 70.1
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 9.6e-99 364.0 261 70.1
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 1.6e-98 363.2 256 72.3
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 1.6e-98 363.2 253 72.3
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 8.1e-98 360.9 253 72.7
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 2.4e-97 359.4 254 70.5
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 4.0e-97 358.6 234 76.5
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 4.0e-97 358.6 257 70.8
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 5.3e-97 358.2 276 67.8
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 5.3e-97 358.2 257 68.9
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 2.0e-96 356.3 254 70.1
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 3.4e-96 355.5 259 68.0
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 4.5e-96 355.1 253 70.0
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 7.6e-96 354.4 241 73.4
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.3e-95 353.6 254 70.5
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.2e-95 352.8 214 79.0
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 2.2e-95 352.8 255 67.5
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.9e-95 352.4 200 86.0
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 2.9e-95 352.4 256 71.1
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 6.4e-95 351.3 255 68.2
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 6.4e-95 351.3 262 70.6
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 1.1e-94 350.5 254 70.5
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 1.1e-94 350.5 255 69.4
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 2.4e-94 349.4 266 69.9
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 3.2e-94 349.0 257 68.5
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 5.4e-94 348.2 215 77.7
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 5.4e-94 348.2 255 68.6
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 7.1e-94 347.8 257 68.1
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 2.1e-93 346.3 255 68.2
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.7e-93 345.9 215 77.2
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.5e-93 345.5 262 69.5
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 4.6e-93 345.1 254 67.7
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 7.9e-93 344.4 262 69.5
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 1.0e-92 344.0 233 73.4
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 5.1e-92 341.7 254 66.9
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 5.1e-92 341.7 254 68.5
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 6.7e-92 341.3 262 68.7
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 6.7e-92 341.3 259 68.7
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.1e-91 340.5 262 68.3
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.5e-91 340.1 277 64.6
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 9.6e-91 337.4 215 75.8
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 9.6e-91 337.4 264 65.2
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.6e-90 336.7 256 66.8
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 3.7e-90 335.5 271 65.3
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 8.1e-90 334.3 216 75.5
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.1e-89 334.0 253 65.6
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.1e-89 334.0 256 68.0
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 5.3e-89 331.6 284 60.9
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 6.9e-89 331.3 260 63.5
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 1.2e-88 330.5 271 63.8
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 2.6e-88 329.3 215 75.8
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 7.6e-88 327.8 256 67.2
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 7.6e-88 327.8 232 69.0
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 1.7e-87 326.6 331 54.7
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 2.9e-87 325.9 243 68.7
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 1.9e-86 323.2 254 63.8
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 2.4e-86 322.8 201 77.6
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 5.5e-86 321.6 262 63.7
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.6e-85 320.1 260 63.8
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.7e-85 319.3 258 63.6
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 2.7e-85 319.3 261 65.5
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.3e-84 317.0 226 69.0
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 3.9e-84 315.5 196 76.5
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 6.7e-84 314.7 264 63.6
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 2.5e-83 312.8 248 63.7
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 7.4e-83 311.2 304 56.2
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 9.6e-83 310.8 262 62.2
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 1.8e-81 306.6 239 65.3
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 1.8e-81 306.6 259 63.3
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.4e-81 306.2 309 55.0
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 3.1e-81 305.8 241 63.1
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 2.0e-80 303.1 261 62.1
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 5.8e-80 301.6 252 61.9
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 7.6e-80 301.2 249 62.2
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 2.2e-79 299.7 239 63.6
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.2e-79 299.7 239 63.6
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 2.2e-79 299.7 239 63.6
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.9e-79 299.3 254 58.3
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 4.9e-79 298.5 254 59.1
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 4.9e-79 298.5 192 75.0
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 3.2e-78 295.8 236 63.1
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 5.5e-78 295.0 219 67.6
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 5.5e-78 295.0 219 68.0
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 7.1e-78 294.7 246 61.4
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 2.7e-77 292.7 193 72.5
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 3.5e-77 292.4 237 61.6
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 6.0e-77 291.6 251 59.0
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 6.0e-77 291.6 254 59.8
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 1.8e-76 290.0 255 58.8
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 2.3e-76 289.7 196 70.4
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 3.0e-76 289.3 196 69.9
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 5.1e-76 288.5 177 80.2
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.1e-75 287.3 255 56.9
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 2.1e-74 283.1 261 56.3
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.7e-74 282.3 253 56.5
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.8e-73 280.0 320 49.4
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.9e-70 270.0 242 59.5
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 4.6e-69 265.4 255 54.1
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 1.9e-67 260.0 232 56.0
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 1.4e-65 253.8 215 60.5
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.9e-63 246.1 253 51.0
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 3.2e-62 242.7 194 61.3
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 8.2e-58 228.0 257 50.6
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 8.0e-45 184.9 154 62.3
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 1.4e-41 174.1 209 41.1
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 2.7e-40 169.9 187 43.9
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 2.5e-30 136.7 152 40.8
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 1.4e-25 120.9 114 57.9
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 4.3e-22 109.4 201 32.8
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 8.6e-15 85.1 88 50.0
Cre12.g551100 Chlamydomonas reinhardtii HOM05D006780 ORTHO05D008455 4.3e-06 56.2 126 31.7


User provided reference genes

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