Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p055159 Quercus lobata HOM05D005893 ORTHO05D007295 4.6e-109 397.9 199 100.0
Cfa001666 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.1e-85 319.3 198 83.3
Haze_16866 Corylus avellana HOM05D005893 ORTHO05D007295 6.5e-79 297.7 250 66.8
CiPaw.01G270700 Carya illinoinensis HOM05D005893 ORTHO05D007295 1.8e-76 289.7 196 77.0
Potri.008G037300 Populus trichocarpa HOM05D005893 ORTHO05D007295 4.2e-62 241.9 191 66.0
Sabra08G0025100 Salix brachista HOM05D005893 ORTHO05D007295 1.6e-61 240.0 191 66.5
Manes.07G096800 Manihot esculenta HOM05D005893 ORTHO05D007295 1.4e-60 236.9 197 64.0
Dinv31297 Davidia involucrata HOM05D005893 ORTHO05D007295 3.0e-60 235.7 198 65.7
Glyma.20G181200 Glycine max HOM05D005893 ORTHO05D007295 1.1e-59 233.8 199 61.8
Phvul.007G096700 Phaseolus vulgaris HOM05D005893 ORTHO05D007295 2.6e-59 232.6 199 61.3
Glyma.10G209400 Glycine max HOM05D005893 ORTHO05D007295 6.3e-58 228.0 199 60.8
Actinidia06754 Actinidia chinensis HOM05D005893 ORTHO05D007295 1.8e-57 226.5 198 60.6
Dinv31211 Davidia involucrata HOM05D005893 ORTHO05D007295 2.0e-56 223.0 169 69.8
TAR633G2388 Trochodendron aralioides HOM05D005893 ORTHO05D007295 4.5e-56 221.9 202 60.4
Thecc.10G078600 Theobroma cacao HOM05D005893 ORTHO05D002604 1.3e-55 220.3 195 65.1
Eucgr.G02856 Eucalyptus grandis HOM05D005893 ORTHO05D007295 1.7e-55 219.9 197 60.4
Ca_10554_v3 Cicer arietinum L. HOM05D005893 ORTHO05D007295 5.0e-55 218.4 198 59.6
COL.COLO4_38473 Corchorus olitorius HOM05D005893 ORTHO05D007295 2.5e-54 216.1 190 63.7
Gohir.A05G295100 Gossypium hirsutum HOM05D005893 ORTHO05D007295 4.2e-54 215.3 191 63.4
Cpa.g.sc53.97 Carica papaya HOM05D005893 ORTHO05D007295 7.2e-54 214.5 199 58.8
Ciclev10030991m.g Citrus clementina HOM05D003292 ORTHO05D004237 7.2e-54 214.5 158 70.9
MD07G1171800 Malus domestica HOM05D005893 ORTHO05D007295 2.7e-53 212.6 198 59.6
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.6e-53 212.2 169 65.7
PGR142G3224 Punica granatum HOM05D005893 ORTHO05D007295 7.9e-53 211.1 197 59.4
VMungo0720G1965 Vigna mungo HOM05D005893 ORTHO05D007295 7.9e-53 211.1 172 64.5
CANSAT56G0338 Cannabis sativa HOM05D005893 ORTHO05D007295 1.4e-52 210.3 199 60.8
DCAR_019095 Daucus carota HOM05D005893 ORTHO05D007295 1.4e-52 210.3 196 58.7
Psat6g182280 Pisum sativum HOM05D005893 ORTHO05D007295 1.8e-52 209.9 198 56.1
Gorai.009G312400 Gossypium raimondii HOM05D005893 ORTHO05D007295 3.0e-52 209.1 190 63.7
TWI15G0972 Tripterygium wilfordii HOM05D005893 ORTHO05D007295 6.7e-52 208.0 198 61.6
Duzib106G0129 Durio zibethinus HOM05D005893 ORTHO05D007295 3.3e-51 205.7 190 61.6
Lj2C17T1 Lonicera japonica HOM05D005893 ORTHO05D007295 9.7e-51 204.1 161 66.5
MD01G1105600 Malus domestica HOM05D005893 ORTHO05D007295 1.7e-50 203.4 199 58.8
RcHm_v2.0_Chr1g0362931 Rosa chinensis HOM05D005893 ORTHO05D007295 6.3e-50 201.4 198 55.6
Gohir.D05G295800 Gossypium hirsutum HOM05D005893 ORTHO05D007295 3.1e-49 199.1 190 59.5
Atru.chr12.817 Acer truncatum HOM05D005893 ORTHO05D007295 5.3e-49 198.4 194 57.7
Sed0005810 Sechium edule HOM05D005893 ORTHO05D007295 1.6e-48 196.8 192 57.8
Lalb_Chr02g0152261 Lupinus albus HOM05D005893 ORTHO05D007295 2.0e-48 196.4 146 64.4
TPR.G1908 Trifolium pratense HOM05D005893 ORTHO05D007295 3.5e-48 195.7 155 63.2
CsaV3_5G036140 Cucumis sativus L. HOM05D005893 ORTHO05D007295 7.7e-48 194.5 194 57.2
Hma1.2p1_1458F.1_g284765 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 7.7e-48 194.5 157 65.6
ClCG05G021120 Citrullus lanatus HOM05D005893 ORTHO05D007295 1.7e-47 193.4 160 64.4
Nn2g11535 Nelumbo nucifera HOM05D005893 ORTHO05D007295 6.5e-47 191.4 200 56.0
GSVIVG01016242001 Vitis vinifera HOM05D003292 ORTHO05D004237 6.5e-47 191.4 178 58.4
MELO3C012415.2 Cucumis melo HOM05D005893 ORTHO05D007295 1.1e-46 190.7 194 56.7
Lj5g0004254 Lotus japonicus HOM05D005893 ORTHO05D007295 1.1e-46 190.7 202 54.0
Lj5g0008044 Lotus japonicus HOM05D005893 ORTHO05D007295 1.1e-46 190.7 202 54.0
Lj5g0026776 Lotus japonicus HOM05D005893 ORTHO05D007295 1.1e-46 190.7 202 54.0
Cc02_g11140 Coffea canephora HOM05D005893 ORTHO05D007295 7.2e-46 188.0 198 55.1
Cfa014465 Carpinus fangiana HOM05D005893 ORTHO05D007295 9.4e-46 187.6 100 89.0
MBI05_g31459_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.3e-44 183.0 187 55.6
PGSC0003DMG400027152 Solanum tuberosum HOM05D005893 ORTHO05D007295 4.0e-44 182.2 200 53.5
Sed0025931 Sechium edule HOM05D005893 ORTHO05D007295 5.2e-44 181.8 194 56.2
Oeu021200.1 Olea europaea HOM05D005893 ORTHO05D007295 6.7e-44 181.4 105 81.9
PSO339G3974 Papaver somniferum HOM05D005893 ORTHO05D007295 1.2e-43 180.6 198 52.5
Hund09872 Selenicereus undatus HOM05D005893 ORTHO05D007295 1.2e-43 180.6 198 53.0
Nitab4.5_0007148g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 1.5e-43 180.3 197 52.3
Sc20g0001660 Simmondsia chinensis HOM05D005893 ORTHO05D007295 2.0e-43 179.9 198 52.5
HPP92_025345 Vanilla planifolia HOM05D005893 ORTHO05D007295 3.3e-43 179.1 197 53.3
Sopen05g031760 Solanum pennellii HOM05D005893 ORTHO05D007295 4.4e-43 178.7 200 53.0
Medtr1g094720 Medicago truncatula HOM05D005893 ORTHO05D007295 9.7e-43 177.6 196 49.0
Nitab4.5_0002194g0010 Nicotiana tabacum HOM05D005893 ORTHO05D007295 2.8e-42 176.0 199 50.8
CAN.G305.42 Capsicum annuum HOM05D005893 ORTHO05D007295 2.4e-41 172.9 170 55.9
vmacro07131 Vaccinium macrocarpon HOM05D000972 ORTHO05D001783 5.3e-41 171.8 170 55.3
MSTRG.382 Avicennia marina HOM05D005893 ORTHO05D007295 1.2e-40 170.6 194 51.5
Migut.F01727 Erythranthe guttata HOM05D005893 ORTHO05D007295 3.5e-40 169.1 159 57.2
SGA_v2.0_scaffold2G01368 Striga asiatica HOM05D005893 ORTHO05D007295 7.7e-40 167.9 163 54.6
Peaxi162Scf00431g00001 Petunia axillaris HOM05D005893 ORTHO05D007295 1.3e-39 167.2 168 57.1
FAN06G1961 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.2e-39 166.4 243 44.0
Aqoxy1G01187 Aquilegia oxysepala HOM05D005893 ORTHO05D007295 2.9e-39 166.0 143 58.7
FAN03G3224 Fragaria x ananassa HOM05D005893 ORTHO05D007295 2.9e-39 166.0 243 42.8
FvH4_7g19000 Fragaria vesca HOM05D005893 ORTHO05D007295 3.8e-39 165.6 243 42.8
SalBow7G0798 Salvia bowleyana HOM05D005893 ORTHO05D007295 3.8e-39 165.6 135 61.5
FAN06G4511 Fragaria x ananassa HOM05D005893 ORTHO05D007295 6.5e-39 164.9 243 42.4
Os02g0819700 Oryza sativa ssp. japonica HOM05D005893 ORTHO05D007295 6.5e-39 164.9 149 59.1
EL10Ac6g14183 Beta vulgaris HOM05D005893 ORTHO05D007295 1.5e-38 163.7 162 54.3
CARHR164770 Cardamine hirsuta HOM05D005893 ORTHO05D007295 1.5e-38 163.7 200 51.0
HanXRQChr08g0218681 Helianthus annuus HOM05D005893 ORTHO05D007295 1.9e-38 163.3 199 51.3
Lsat_1_v5_gn_8_20480 Lactuca sativa HOM05D005893 ORTHO05D007295 1.9e-38 163.3 198 50.0
Ah.01g004770 Amaranthus hybridus HOM05D005893 ORTHO05D007295 3.2e-38 162.5 165 55.2
AUR62014260 Chenopodium quinoa HOM05D005893 ORTHO05D007295 4.2e-38 162.2 189 47.1
ATR0680G313 Amborella trichopoda HOM05D005893 ORTHO05D007295 5.5e-38 161.8 112 69.6
EL10Ac6g14385 Beta vulgaris HOM05D005893 ORTHO05D007295 5.5e-38 161.8 162 53.7
SalBow6G7151 Salvia bowleyana HOM05D005893 ORTHO05D007295 9.4e-38 161.0 195 49.2
unitig_46.g18354 Utricularia gibba HOM05D005893 ORTHO05D007295 1.6e-37 160.2 120 62.5
THA.LOC104825224 Tarenaya hassleriana HOM05D005893 ORTHO05D007295 2.1e-37 159.8 201 49.3
ECA233G2346 Erigeron canadensis HOM05D005893 ORTHO05D007295 3.6e-37 159.1 196 48.5
FAN10G0987 Fragaria x ananassa HOM05D005893 ORTHO05D007295 3.6e-37 159.1 243 42.0
AT3G54826 Arabidopsis thaliana HOM05D005893 ORTHO05D007295 4.7e-37 158.7 199 48.7
unitig_37.g12607 Utricularia gibba HOM05D000329 ORTHO05D002132 2.3e-36 156.4 143 54.5
Carub.0005s2142 Capsella rubella HOM05D005893 ORTHO05D007295 5.2e-36 155.2 199 47.2
AUR62038482 Chenopodium quinoa HOM05D005893 ORTHO05D007295 1.2e-35 154.1 145 54.5
Solyc05g053250.4 Solanum lycopersicum HOM05D005893 ORTHO05D007295 1.2e-35 154.1 183 50.8
FAN01G0197 Fragaria x ananassa HOM05D005893 ORTHO05D007295 1.5e-35 153.7 207 44.4
AL5G35910 Arabidopsis lyrata HOM05D005893 ORTHO05D007295 2.6e-35 152.9 199 46.2
Thhalv10010741m.g Eutrema salsugineum HOM05D005893 ORTHO05D007295 5.7e-35 151.8 199 46.2
Zm00001eb259110 Zea mays HOM05D005893 ORTHO05D007295 9.8e-35 151.0 141 58.2
Hma1.2p1_1458F.1_g284770 Hydrangea macrophylla HOM05D005893 ORTHO05D007295 3.7e-34 149.1 82 85.4
SEGI_03670 Sequoiadendron giganteum HOM05D005893 ORTHO05D007295 8.3e-34 147.9 158 50.0
Aa31sc66G40 Aethionema arabicum HOM05D005893 ORTHO05D007295 3.1e-33 146.0 171 48.0
Sp5g07600 Schrenkiella parvula HOM05D005893 ORTHO05D007295 5.4e-33 145.2 199 44.7
BcaB01g00158 Brassica carinata HOM05D005893 ORTHO05D007295 2.0e-32 143.3 112 61.6
BcaB02g07716 Brassica carinata HOM05D005893 ORTHO05D007295 5.9e-32 141.7 199 43.2
BcaC08g44701 Brassica carinata HOM05D005893 ORTHO05D007295 5.9e-32 141.7 140 53.6
A09p47740 Brassica napus HOM05D005893 ORTHO05D007295 5.9e-32 141.7 199 43.7
BolC8t50606H Brassica oleracea HOM05D005893 ORTHO05D007295 7.7e-32 141.4 199 43.7
BraA09t40232Z Brassica rapa HOM05D005893 ORTHO05D007295 1.0e-31 141.0 199 43.7
C06p22370 Brassica napus HOM05D005893 ORTHO05D007295 1.7e-31 140.2 210 42.9
A07p22290 Brassica napus HOM05D005893 ORTHO05D007295 3.8e-31 139.0 201 43.3
C08p29970 Brassica napus HOM05D005893 ORTHO05D007295 3.8e-31 139.0 199 43.2
BcaC07g39781 Brassica carinata HOM05D005893 ORTHO05D007295 1.1e-30 137.5 209 44.5
BraA07t29907Z Brassica rapa HOM05D005893 ORTHO05D007295 1.1e-30 137.5 199 43.2
CDE01G0774 Ceratophyllum demersum HOM05D005893 ORTHO05D007295 2.1e-29 133.3 78 74.4
AagrBONN_evm.TU.Sc2ySwM_228.2692 Anthoceros agrestis HOM05D005893 ORTHO05D007295 5.2e-28 128.6 94 59.6
CBR_g38445 Chara braunii HOM05D005893 ORTHO05D007295 1.5e-27 127.1 98 60.2
FAN06G0522 Fragaria x ananassa HOM05D003292 ORTHO05D004237 1.4e-25 120.6 243 34.6
Pp3c10_20870 Physcomitrium patens HOM05D005893 ORTHO05D007295 9.2e-25 117.9 122 46.7
SGA_v2.0_scaffold223G42811 Striga asiatica HOM05D005893 ORTHO05D007295 2.7e-24 116.3 107 50.5
Mapoly0143s0034 Marchantia polymorpha HOM05D005893 ORTHO05D007295 5.9e-24 115.2 196 37.8
MBI05_g14981_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.6e-23 111.3 135 48.1
MBI05_g31456_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.6e-23 111.3 94 58.5
SMO364G0951 Selaginella moellendorffii HOM05D005893 ORTHO05D007295 1.5e-22 110.5 72 69.4
SGA_v2.0_scaffold51G18702 Striga asiatica HOM05D005893 ORTHO05D007295 1.8e-20 103.6 110 46.4
SGA_v2.0_scaffold211G42109 Striga asiatica HOM05D005893 ORTHO05D007295 3.0e-20 102.8 115 44.3
MBI05_g14980_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.3e-18 94.7 135 45.9
MBI08_g29407_MAGBIO Magnolia biondii HOM05D002127 ORTHO05D007295 4.1e-17 92.4 117 46.2
MCO14G392 Micromonas commoda HOM05D005893 ORTHO05D007295 7.8e-16 88.2 152 34.9
Peaxi162Scf00066g01616 Petunia axillaris HOM05D005893 ORTHO05D007295 7.3e-14 81.6 73 56.2
Rhsim05G0120600 Rhododendron simsii HOM05D005893 ORTHO05D007295 9.5e-14 81.3 181 34.3
MBI19_g05599_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 2.8e-13 79.7 93 50.5
Cre07.g334851 Chlamydomonas reinhardtii HOM05D005893 ORTHO05D007295 6.8e-12 75.1 111 38.7
MBI04_g06289_MAGBIO Magnolia biondii HOM05D005893 ORTHO05D007295 8.9e-12 74.7 119 42.0
Mapoly0032s0026 Marchantia polymorpha HOM05D005893 ORTHO05D007295 3.4e-11 72.8 97 37.1
Cfa025074 Carpinus fangiana HOM05D005893 ORTHO05D007295 2.9e-10 69.7 170 30.0
PRCOL_00001193 Prasinoderma coloniale HOM05D001599 ORTHO05D003184 3.9e-07 59.3 98 34.7
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 5.6e-06 55.5 94 31.9


User provided reference genes

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