Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 0.0e+00 1307.7 634 100.0
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 2.3e-263 912.1 636 72.8
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 3.0e-263 911.8 642 73.1
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 2.2e-261 905.6 636 73.0
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 1.2e-259 899.8 634 72.6
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 1.2e-259 899.8 634 72.6
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 3.2e-257 891.7 636 71.9
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.3e-254 881.7 636 71.4
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 7.4e-254 880.6 642 71.0
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 7.4e-254 880.6 634 70.8
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.2e-253 879.0 636 71.4
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 5.9e-251 870.9 642 70.4
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 3.8e-250 868.2 635 71.0
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 5.0e-250 867.8 643 69.5
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 4.2e-249 864.8 636 69.2
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 1.2e-248 863.2 624 71.6
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 2.7e-248 862.1 636 70.0
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 3.6e-248 861.7 636 70.9
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 8.0e-248 860.5 642 69.2
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.4e-246 854.7 635 70.1
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 9.7e-246 853.6 635 69.6
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 3.7e-245 851.7 636 69.8
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 3.7e-245 851.7 643 68.9
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 4.8e-245 851.3 635 69.3
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 4.8e-245 851.3 635 69.3
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 8.2e-245 850.5 635 69.1
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 8.2e-245 850.5 635 69.1
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 8.2e-245 850.5 674 67.5
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 1.1e-244 850.1 643 68.7
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 1.6e-243 846.3 635 68.8
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 1.6e-243 846.3 632 69.5
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 2.6e-243 845.5 634 68.6
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 3.5e-243 845.1 635 68.8
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 6.5e-242 840.9 635 68.7
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 8.5e-242 840.5 636 69.0
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.5e-241 839.7 633 69.0
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 5.5e-241 837.8 636 69.0
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 7.2e-241 837.4 632 67.2
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 7.2e-241 837.4 636 68.4
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 2.7e-240 835.5 634 68.1
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 6.1e-240 834.3 637 68.3
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 4.0e-239 831.6 635 68.0
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 4.4e-238 828.2 634 67.8
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 5.7e-238 827.8 635 68.5
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 9.7e-238 827.0 635 67.6
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 6.3e-237 824.3 702 62.7
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 8.2e-237 823.9 702 62.5
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 1.1e-236 823.5 634 67.5
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 3.1e-236 822.0 634 67.5
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 4.1e-236 821.6 634 67.5
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 4.5e-235 818.1 637 66.1
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 1.0e-234 817.0 629 68.2
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 3.8e-234 815.1 630 67.9
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 6.5e-234 814.3 640 65.9
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 6.5e-234 814.3 641 67.4
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 8.5e-234 813.9 631 67.7
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 1.9e-233 812.8 634 67.0
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 3.2e-233 812.0 636 66.8
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 2.1e-232 809.3 630 65.9
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 8.0e-232 807.4 632 65.7
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 6.8e-231 804.3 656 65.2
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.4e-230 802.0 629 65.3
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 3.4e-230 802.0 649 64.7
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.7e-229 799.7 630 64.9
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.2e-229 799.3 630 65.6
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 6.3e-229 797.7 639 65.3
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 8.3e-229 797.3 629 66.0
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.8e-228 796.2 630 65.4
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 1.8e-228 796.2 626 65.8
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 3.1e-228 795.4 627 66.8
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 3.1e-228 795.4 639 65.1
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 5.4e-228 794.7 630 66.2
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 7.7e-227 790.8 655 65.2
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.0e-226 790.4 642 64.6
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 1.2e-224 783.5 631 63.5
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 2.8e-224 782.3 630 65.2
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 4.5e-219 765.0 630 63.7
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 5.0e-218 761.5 630 64.6
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 3.3e-217 758.8 628 65.0
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 4.4e-214 748.4 631 63.7
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 3.5e-211 738.8 597 66.3
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 1.1e-209 733.8 626 60.9
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 1.2e-208 730.3 641 62.1
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 3.4e-206 722.2 638 61.9
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.1e-201 707.2 626 58.9
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 2.8e-200 702.6 641 59.9
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 4.4e-198 695.3 609 61.1
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 2.2e-197 693.0 654 58.9
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 8.3e-197 691.0 544 66.4
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 4.2e-188 662.1 670 55.2
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 2.1e-187 659.8 852 47.2
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 4.2e-180 635.6 643 56.5
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.0e-178 630.9 626 56.9
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 9.9e-174 614.4 517 62.3
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 1.4e-172 610.5 462 67.5
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 4.2e-172 609.0 443 71.6
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 3.9e-170 602.4 605 57.2
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.5e-169 600.5 465 66.9
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 9.6e-169 597.8 441 70.1
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 3.1e-167 592.8 628 50.0
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 8.4e-165 584.7 628 48.6
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 8.7e-154 548.1 619 46.7
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 9.1e-143 511.5 463 57.0
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 1.3e-136 491.1 583 45.1
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 2.2e-128 463.8 454 57.5
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 2.8e-128 463.4 415 55.4
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.0e-125 454.9 367 64.9
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.2e-124 449.9 581 45.4
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 5.9e-118 429.1 270 80.0
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 1.4e-103 381.3 723 34.0
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 5.4e-103 379.4 317 65.6
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 4.3e-100 369.8 285 65.6
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 3.2e-95 353.6 337 57.3
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 2.0e-89 334.3 443 49.7
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.0e-82 310.1 273 60.4
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 7.6e-73 279.3 468 36.3
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 4.2e-71 273.5 156 84.0
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 5.4e-71 273.1 207 65.7
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.4e-66 257.7 277 53.1
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 4.0e-66 256.9 196 68.9
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 9.9e-65 252.3 168 74.4
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 2.9e-64 250.8 192 69.3
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 6.4e-64 249.6 200 66.5
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 2.5e-60 237.7 687 27.1
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.9e-56 224.2 152 78.3
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 8.1e-51 206.1 152 69.1
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.1e-50 205.7 642 26.2
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 4.5e-49 200.3 139 75.5
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 8.4e-48 196.1 149 70.5
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 5.5e-47 193.4 162 60.5
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.7e-46 191.0 149 68.5
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.5e-41 175.3 153 58.2
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 3.4e-41 174.1 163 51.5
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 1.1e-36 159.1 357 29.7
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 1.1e-34 152.5 86 87.2
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.7e-32 145.2 109 70.6
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 1.4e-31 142.1 839 20.5
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 4.8e-27 127.1 120 55.0
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 3.6e-22 110.9 75 70.7
Rhsim08G0243300 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.0e-16 92.8 52 75.0
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.3e-16 92.4 68 66.2
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 9.4e-15 86.3 67 64.2
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 9.1e-10 69.7 54 63.0
MD00G1077200 Malus domestica HOM05D061066 ORTHO05D006125 3.6e-06 57.8 26 88.5
MD03G1275600 Malus domestica HOM05D061066 ORTHO05D006125 3.6e-06 57.8 26 88.5


User provided reference genes

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