Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.4e-265 918.3 481 100.0
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 1.4e-260 902.5 481 98.8
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 2.8e-221 771.9 481 87.7
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.5e-214 749.6 460 87.2
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 8.2e-213 743.8 472 84.7
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.6e-211 739.6 459 85.6
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.5e-209 733.0 476 82.4
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.2e-206 723.4 451 83.6
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.0e-206 722.6 454 83.9
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 9.7e-206 720.3 457 83.6
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 9.7e-206 720.3 445 84.0
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 4.8e-205 718.0 472 82.0
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 6.3e-205 717.6 446 84.1
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 4.5e-203 711.4 447 83.4
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 3.8e-202 708.4 447 83.0
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.1e-201 706.8 446 83.4
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.5e-201 706.4 452 82.1
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 6.1e-200 701.0 448 81.7
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 6.1e-200 701.0 461 79.2
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.8e-199 699.5 462 80.3
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.8e-199 699.5 476 78.2
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 3.0e-199 698.7 448 81.2
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 4.0e-199 698.4 448 81.2
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 5.2e-199 698.0 447 82.6
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 6.8e-199 697.6 448 81.5
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 6.8e-199 697.6 456 81.6
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 6.8e-199 697.6 445 82.9
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 8.8e-199 697.2 443 81.5
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.5e-198 696.4 453 78.8
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 3.4e-198 695.3 481 78.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 7.5e-198 694.1 456 80.5
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 9.8e-198 693.7 443 82.8
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 2.2e-197 692.6 460 80.9
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 4.8e-197 691.4 447 81.7
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 8.3e-197 690.6 447 81.4
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.1e-196 690.3 451 80.7
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 3.1e-196 688.7 479 75.4
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.6e-195 686.4 460 77.6
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 2.0e-195 686.0 461 77.0
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 2.7e-195 685.6 451 79.8
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 1.0e-194 683.7 454 79.3
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 5.0e-194 681.4 427 82.9
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 8.6e-194 680.6 442 81.2
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 8.6e-194 680.6 442 81.2
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 1.5e-193 679.9 464 77.8
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 2.5e-193 679.1 442 81.0
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 7.2e-193 677.6 451 78.7
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 7.2e-193 677.6 467 76.0
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.2e-192 676.8 451 77.8
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.2e-192 676.8 465 76.8
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 2.1e-192 676.0 475 75.6
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.6e-192 675.2 426 82.4
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 1.0e-191 673.7 458 77.7
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.0e-191 673.7 451 79.4
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.3e-191 672.5 453 78.8
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 4.0e-191 671.8 483 74.3
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 6.8e-191 671.0 443 79.7
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.4e-190 668.7 453 78.6
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 5.7e-190 667.9 450 77.3
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 7.5e-190 667.5 450 76.4
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.3e-189 666.8 453 77.9
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.7e-189 665.2 450 77.1
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 3.7e-189 665.2 444 79.3
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 1.1e-188 663.7 451 76.7
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 2.0e-187 659.4 472 74.8
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 2.7e-187 659.1 472 74.6
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 5.9e-187 657.9 430 80.2
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.0e-186 657.1 472 75.0
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.3e-186 656.8 472 74.4
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 2.3e-186 656.0 481 73.6
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 2.9e-186 655.6 452 75.9
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 2.9e-186 655.6 472 73.9
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 6.6e-186 654.4 459 76.0
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.5e-185 653.3 481 73.4
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 1.5e-185 653.3 481 73.2
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 2.5e-185 652.5 459 75.4
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 3.3e-185 652.1 472 74.2
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 5.6e-185 651.4 472 74.2
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 5.6e-185 651.4 441 79.4
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.2e-184 650.2 473 74.2
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 3.6e-184 648.7 479 72.7
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 3.1e-183 645.6 459 74.7
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 4.0e-183 645.2 459 74.5
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 6.8e-183 644.4 459 74.7
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.2e-182 643.7 464 75.6
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.5e-182 643.3 398 85.4
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 4.4e-182 641.7 474 73.8
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 4.4e-182 641.7 408 82.6
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 4.1e-180 635.2 507 69.4
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 2.7e-179 632.5 463 73.4
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.2e-174 617.1 444 75.0
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.6e-174 615.9 405 79.5
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 2.6e-174 615.9 467 70.9
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 5.8e-174 614.8 506 67.6
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.1e-172 610.5 415 80.0
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 5.4e-172 608.2 401 79.8
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 2.7e-171 605.9 397 81.9
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 3.5e-171 605.5 398 81.2
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 9.9e-166 587.4 438 70.1
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.9e-162 575.5 398 79.4
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 7.3e-161 571.2 408 75.2
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 2.6e-158 562.8 447 66.4
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 2.6e-158 562.8 444 67.6
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.6e-155 553.5 385 74.8
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 6.2e-152 541.6 422 67.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 4.5e-142 508.8 333 83.2
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.4e-141 505.0 456 65.4
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.9e-132 476.9 438 60.0
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.2e-131 474.2 416 65.1
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 6.0e-131 471.9 359 68.8
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 3.2e-124 449.5 433 58.4
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 3.5e-123 446.0 329 70.2
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 1.3e-122 444.1 303 78.5
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 2.1e-115 420.2 433 55.0
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 1.7e-109 400.6 388 60.1
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.9e-108 397.1 253 83.4
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.4e-87 327.0 219 79.5
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.2e-83 314.7 212 80.7
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.1e-79 301.6 194 80.4
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 9.1e-79 298.5 201 77.6
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.7e-72 277.7 204 72.5
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 5.8e-65 252.7 146 85.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 9.8e-65 251.9 217 60.4
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.6e-62 244.6 182 75.8
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 4.7e-51 206.5 456 35.7
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 7.1e-47 192.6 123 74.0
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.3e-37 161.8 137 65.0
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.0e-37 160.6 148 62.2
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.3e-36 157.1 145 62.8
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 1.1e-34 152.1 101 82.2
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 9.0e-34 149.1 102 75.5
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 4.9e-32 143.3 263 38.4
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 4.9e-32 143.3 156 57.1
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.4e-31 141.7 95 77.9
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 3.0e-29 134.0 263 36.5
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.6e-27 127.1 99 71.7
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.1e-19 101.3 120 51.7
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 2.0e-17 94.7 87 58.6
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 5.5e-15 86.7 75 56.0
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 7.1e-15 86.3 105 45.7
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 2.7e-14 84.3 90 57.8
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 6.0e-14 83.2 82 57.3
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.0e-13 82.4 46 78.3
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.0e-13 82.4 46 78.3
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.9e-12 78.2 64 65.6
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 4.3e-12 77.0 142 45.8
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 9.6e-12 75.9 144 45.1
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 1.3e-11 75.5 61 54.1
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.3e-11 75.5 81 54.3
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-11 75.5 142 45.1
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-11 75.5 142 45.1
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.3e-11 75.5 142 45.1
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 1.6e-11 75.1 142 45.1
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-11 74.7 63 63.5
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-11 74.7 142 44.4
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 2.1e-11 74.7 64 62.5
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 2.1e-11 74.7 142 45.1
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 3.7e-11 73.9 64 62.5
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 3.1e-10 70.9 81 51.9
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 4.1e-10 70.5 165 35.8
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.5e-09 68.6 76 53.9
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.6e-09 67.8 144 43.8
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 4.5e-09 67.0 175 32.6
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 1.4e-07 62.0 48 72.9
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 1.9e-07 61.6 68 50.0
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 3.2e-07 60.8 47 68.1
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 2.1e-06 58.2 45 64.4
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 2.1e-06 58.2 39 71.8
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.7e-06 57.8 63 55.6


User provided reference genes

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