Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p033370 Quercus lobata HOM05D020603 ORTHO05D019575 4.2e-62 241.1 117 100.0
QL07p033365 Quercus lobata HOM05D020603 ORTHO05D019575 4.4e-27 124.8 73 84.9
QL07p033420 Quercus lobata HOM05D020603 ORTHO05D019575 1.9e-25 119.4 71 80.3
CDE06G1936 Ceratophyllum demersum HOM05D002411 ORTHO05D002564 4.3e-14 81.6 83 45.8
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.3e-14 81.6 115 33.9
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 7.3e-14 80.9 115 39.1
TAR623G1049 Trochodendron aralioides HOM05D020603 ORTHO05D019575 1.2e-13 80.1 60 61.7
Ca_07722_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 6.2e-13 77.8 54 63.0
Ca_07728_v3 Cicer arietinum L. HOM05D007559 ORTHO05D009642 6.2e-13 77.8 54 63.0
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 4.0e-12 75.1 115 32.2
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 3.4e-11 72.0 115 33.9
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 2.9e-10 68.9 106 33.0
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 2.9e-10 68.9 106 33.0
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 4.9e-10 68.2 98 33.7
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 1.1e-09 67.0 130 26.9
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.4e-09 66.6 84 42.9
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 2.4e-09 65.9 116 31.9
Migut.F01800 Erythranthe guttata HOM05D005287 ORTHO05D006893 2.4e-09 65.9 116 30.2
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 2.4e-09 65.9 84 38.1
ECA234G0433 Erigeron canadensis HOM05D003689 ORTHO05D003950 3.2e-09 65.5 108 34.3
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 4.1e-09 65.1 113 27.4
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 7.1e-09 64.3 115 34.8
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.6e-08 63.2 98 33.7
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 1.6e-08 63.2 110 34.5
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 2.7e-08 62.4 110 33.6
Carub.0004s2039 Capsella rubella HOM05D020603 ORTHO05D019575 2.7e-08 62.4 42 64.3
Lsat_1_v5_gn_4_115801 Lactuca sativa HOM05D001779 ORTHO05D001753 3.5e-08 62.0 110 30.9
Thhalv10022574m.g Eutrema salsugineum HOM05D005287 ORTHO05D006893 4.6e-08 61.6 110 33.6
Hma1.2p1_0286F.1_g114160 Hydrangea macrophylla HOM05D005287 ORTHO05D006893 4.6e-08 61.6 82 36.6
BcaB03g16413 Brassica carinata HOM05D005287 ORTHO05D006893 6.0e-08 61.2 110 34.5
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 6.0e-08 61.2 110 33.6
AT2G17525 Arabidopsis thaliana HOM05D006556 ORTHO05D008146 7.8e-08 60.8 103 33.0
TAR624G0606 Trochodendron aralioides HOM05D002986 ORTHO05D007611 7.8e-08 60.8 117 27.4
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.3e-07 60.1 113 32.7
BcaB02g09189 Brassica carinata HOM05D007559 ORTHO05D019575 1.3e-07 60.1 41 61.0
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.3e-07 60.1 113 32.7
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 1.7e-07 59.7 115 28.7
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 1.7e-07 59.7 78 33.3
Atru.chr3.509 Acer truncatum HOM05D007242 ORTHO05D009089 2.3e-07 59.3 106 30.2
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 2.3e-07 59.3 83 36.1
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 3.0e-07 58.9 110 31.8
AL3G50480 Arabidopsis lyrata HOM05D006556 ORTHO05D008146 3.0e-07 58.9 103 32.0
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 3.0e-07 58.9 114 26.3
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 3.0e-07 58.9 114 26.3
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 3.0e-07 58.9 110 30.9
MD03G1106100 Malus domestica HOM05D031184 ORTHO05D010307 3.0e-07 58.9 72 30.6
SMO364G0905 Selaginella moellendorffii HOM05D031156 ORTHO05D000355 3.0e-07 58.9 106 24.5
TPR.G9763 Trifolium pratense HOM05D008100 ORTHO05D009715 3.0e-07 58.9 91 34.1
Nitab4.5_0000846g0020 Nicotiana tabacum HOM05D006556 ORTHO05D008146 3.9e-07 58.5 110 30.9
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 3.9e-07 58.5 107 29.9
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 5.1e-07 58.2 107 31.8
COL.COLO4_21653 Corchorus olitorius HOM05D000162 ORTHO05D000090 5.1e-07 58.2 113 28.3
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 5.1e-07 58.2 105 31.4
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 5.1e-07 58.2 103 28.2
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 6.6e-07 57.8 108 26.9
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 8.6e-07 57.4 111 26.1
AUR62000390 Chenopodium quinoa HOM05D000162 ORTHO05D000090 8.6e-07 57.4 109 26.6
MBI13_g05940_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 8.6e-07 57.4 78 33.3
Oeu006556.1 Olea europaea HOM05D001779 ORTHO05D001753 8.6e-07 57.4 96 31.2
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.1e-06 57.0 91 34.1
Nitab4.5_0001056g0080 Nicotiana tabacum HOM05D006556 ORTHO05D008146 1.1e-06 57.0 110 30.0
SGA_v2.0_scaffold19G08834 Striga asiatica HOM05D000162 ORTHO05D000090 1.1e-06 57.0 104 28.8
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.1e-06 57.0 95 30.5
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 1.5e-06 56.6 115 28.7
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 1.5e-06 56.6 95 29.5
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 1.5e-06 56.6 84 35.7
SEGI_41583 Sequoiadendron giganteum HOM05D000891 ORTHO05D000761 1.5e-06 56.6 98 21.4
ATR0693G157 Amborella trichopoda HOM05D003039 ORTHO05D009478 1.9e-06 56.2 99 31.3
arahy.Tifrunner.gnm1.ann1.U8UX16 Arachis hypogaea HOM05D000239 ORTHO05D009715 1.9e-06 56.2 79 34.2
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.9e-06 56.2 109 26.6
Gorai.013G000300 Gossypium raimondii HOM05D007063 ORTHO05D008822 1.9e-06 56.2 101 27.7
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 1.9e-06 56.2 110 29.1
RcHm_v2.0_Chr5g0073761 Rosa chinensis HOM05D000162 ORTHO05D000090 1.9e-06 56.2 107 29.9
arahy.Tifrunner.gnm1.ann1.8PB8XJ Arachis hypogaea HOM05D008100 ORTHO05D009715 2.5e-06 55.8 81 32.1
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 2.5e-06 55.8 110 30.0
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 2.5e-06 55.8 96 30.2
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 2.5e-06 55.8 96 30.2
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 2.5e-06 55.8 96 30.2
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 2.5e-06 55.8 102 24.5
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 2.5e-06 55.8 125 22.4
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 2.5e-06 55.8 97 28.9
MBI15_g47188_MAGBIO Magnolia biondii HOM05D031115 ORTHO05D020197 2.5e-06 55.8 106 27.4
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 2.5e-06 55.8 110 31.8
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 3.3e-06 55.5 102 28.4
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 3.3e-06 55.5 106 27.4
AL3G49010 Arabidopsis lyrata HOM05D008657 ORTHO05D010869 3.3e-06 55.5 101 28.7
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 3.3e-06 55.5 105 27.6
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 3.3e-06 55.5 105 27.6
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 3.3e-06 55.5 106 29.2
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 3.3e-06 55.5 100 30.0
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 3.3e-06 55.5 100 30.0
MD04G1078100 Malus domestica HOM05D000001 ORTHO05D009891 3.3e-06 55.5 100 31.0
Prupe.6G087600 Prunus persica HOM05D000162 ORTHO05D000090 3.3e-06 55.5 107 29.9
SMO143G0105 Selaginella moellendorffii HOM05D017046 ORTHO05D010847 3.3e-06 55.5 100 30.0
PGSC0003DMG400006810 Solanum tuberosum HOM05D030225 ORTHO05D020317 3.3e-06 55.5 110 28.2
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 4.3e-06 55.1 83 33.7
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 4.3e-06 55.1 115 27.8
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 4.3e-06 55.1 114 26.3
CAN.G649.15 Capsicum annuum HOM05D001779 ORTHO05D001753 4.3e-06 55.1 107 27.1
CARHR107690 Cardamine hirsuta HOM05D006556 ORTHO05D008146 4.3e-06 55.1 103 31.1
CARHR133080 Cardamine hirsuta HOM05D007559 ORTHO05D009642 4.3e-06 55.1 40 62.5
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 4.3e-06 55.1 128 22.7
ClCG09G008970 Citrullus lanatus HOM05D001779 ORTHO05D001753 4.3e-06 55.1 97 28.9
Rhsim01G0024000 Rhododendron simsii HOM05D006556 ORTHO05D008146 4.3e-06 55.1 101 28.7
SalBow3G2959 Salvia bowleyana HOM05D000162 ORTHO05D000090 4.3e-06 55.1 110 29.1
SHI27995 Sapria himalayana HOM05D007559 ORTHO05D009642 4.3e-06 55.1 38 65.8
Sed0000141 Sechium edule HOM05D000001 ORTHO05D009891 4.3e-06 55.1 100 29.0
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 4.3e-06 55.1 106 26.4
vmacro08421 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 4.3e-06 55.1 95 29.5
HPP92_023170 Vanilla planifolia HOM05D007128 ORTHO05D009059 4.3e-06 55.1 111 27.9
ATR0730G080 Amborella trichopoda HOM05D003039 ORTHO05D019575 5.6e-06 54.7 87 33.3
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 5.6e-06 54.7 115 27.8
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 5.6e-06 54.7 109 25.7
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 5.6e-06 54.7 109 25.7
Carub.0003s3161 Capsella rubella HOM05D006556 ORTHO05D008146 5.6e-06 54.7 100 31.0
CAN.G630.84 Capsicum annuum HOM05D006556 ORTHO05D008146 5.6e-06 54.7 110 28.2
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 5.6e-06 54.7 106 27.4
ECA236G0552 Erigeron canadensis HOM05D001779 ORTHO05D001753 5.6e-06 54.7 107 25.2
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 5.6e-06 54.7 105 28.6
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 5.6e-06 54.7 98 32.7
FvH4_3g42430 Fragaria vesca HOM05D000162 ORTHO05D000090 5.6e-06 54.7 73 35.6
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 5.6e-06 54.7 110 27.3
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 5.6e-06 54.7 76 32.9
Nitab4.5_0001146g0150 Nicotiana tabacum HOM05D001779 ORTHO05D001753 5.6e-06 54.7 108 26.9
PGSC0003DMG400012059 Solanum tuberosum HOM05D006556 ORTHO05D008146 5.6e-06 54.7 103 29.1
SGA_v2.0_scaffold33G13374 Striga asiatica HOM05D000891 ORTHO05D000761 5.6e-06 54.7 111 30.6
TPR.G7961 Trifolium pratense HOM05D000424 ORTHO05D000355 5.6e-06 54.7 103 23.3
TAR628G0602 Trochodendron aralioides HOM05D006556 ORTHO05D008146 5.6e-06 54.7 103 27.2
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 7.3e-06 54.3 115 27.8
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 7.3e-06 54.3 109 25.7
BolC4t24488H Brassica oleracea HOM05D031115 ORTHO05D020197 7.3e-06 54.3 107 27.1
CDE10G0767 Ceratophyllum demersum HOM05D000001 ORTHO05D000003 7.3e-06 54.3 103 25.2
MELO3C021027.2 Cucumis melo HOM05D001779 ORTHO05D001753 7.3e-06 54.3 97 27.8
Migut.J00080 Erythranthe guttata HOM05D007559 ORTHO05D009642 7.3e-06 54.3 40 57.5
Thhalv10022597m.g Eutrema salsugineum HOM05D006556 ORTHO05D008146 7.3e-06 54.3 103 31.1
FAN03G2556 Fragaria x ananassa HOM05D006556 ORTHO05D008146 7.3e-06 54.3 110 29.1
Manes.11G093600 Manihot esculenta HOM05D000001 ORTHO05D009961 7.3e-06 54.3 106 29.2
Nitab4.5_0000428g0500 Nicotiana tabacum HOM05D011051 ORTHO05D014160 7.3e-06 54.3 106 24.5
Os02g0321000 Oryza sativa ssp. japonica HOM05D017260 ORTHO05D014237 7.3e-06 54.3 105 26.7
Peaxi162Scf00052g00082 Petunia axillaris HOM05D006556 ORTHO05D008146 7.3e-06 54.3 104 27.9
Psat3g145680 Pisum sativum HOM05D001779 ORTHO05D001753 7.3e-06 54.3 109 26.6
Potri.007G079400 Populus trichocarpa HOM05D003039 ORTHO05D009478 7.3e-06 54.3 98 31.6
PGR083G2073 Punica granatum HOM05D003039 ORTHO05D008410 7.3e-06 54.3 108 25.9
Solyc09g061760.1 Solanum lycopersicum HOM05D006556 ORTHO05D008146 7.3e-06 54.3 103 29.1
Sopen09g024760 Solanum pennellii HOM05D006556 ORTHO05D008146 7.3e-06 54.3 110 29.1
HPP92_017937 Vanilla planifolia HOM05D000855 ORTHO05D008530 7.3e-06 54.3 105 29.5
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 9.5e-06 53.9 108 31.5
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 9.5e-06 53.9 108 31.5
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 9.5e-06 53.9 110 27.3
DCAR_031834 Daucus carota HOM05D000001 ORTHO05D000003 9.5e-06 53.9 102 25.5
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 9.5e-06 53.9 107 25.2


User provided reference genes

Program Settings