Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p028220 Quercus lobata HOM05D003704 ORTHO05D005892 0.0e+00 1159.8 574 100.0
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 5.3e-291 1003.8 694 76.5
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 1.1e-267 926.4 694 70.9
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 7.7e-266 920.2 700 70.3
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 5.0e-265 917.5 700 70.0
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 4.3e-261 904.4 697 68.4
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 5.0e-257 891.0 699 67.4
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 4.2e-256 887.9 699 67.2
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 2.7e-255 885.2 700 67.0
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 2.3e-254 882.1 687 68.3
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 5.1e-254 880.9 695 67.6
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 8.8e-254 880.2 700 67.1
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 7.4e-253 877.1 695 66.9
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 2.8e-252 875.2 699 66.2
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 3.7e-252 874.8 700 66.9
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 3.1e-251 871.7 700 66.6
TAR628G1325 Trochodendron aralioides HOM05D003704 ORTHO05D005892 3.1e-251 871.7 696 67.1
Potri.003G201200 Populus trichocarpa HOM05D003704 ORTHO05D005892 1.2e-250 869.8 690 65.5
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 1.6e-250 869.4 700 66.0
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 3.5e-250 868.2 699 66.2
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 2.2e-249 865.5 703 65.4
Sabra03G0148800 Salix brachista HOM05D003704 ORTHO05D005892 1.2e-247 859.8 690 64.8
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 5.2e-246 854.4 695 66.6
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 8.8e-246 853.6 689 65.7
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 5.7e-245 850.9 699 65.1
Aqoxy1G04161 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 1.7e-244 849.4 700 64.3
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 1.7e-244 849.4 694 64.7
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 2.2e-244 849.0 691 64.5
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 2.8e-244 848.6 700 65.1
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 3.7e-244 848.2 699 65.1
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 1.1e-243 846.7 694 64.6
Gohir.A08G225100 Gossypium hirsutum HOM05D003704 ORTHO05D005892 1.8e-243 845.9 699 64.7
Cc02_g29160 Coffea canephora HOM05D003704 ORTHO05D005892 2.4e-243 845.5 700 64.1
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 2.4e-243 845.5 699 64.4
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 5.3e-243 844.3 692 64.2
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 9.1e-243 843.6 699 63.8
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 1.6e-242 842.8 694 64.6
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 3.5e-242 841.6 700 64.4
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 1.7e-241 839.3 693 65.2
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 2.9e-241 838.6 700 64.1
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 5.0e-241 837.8 699 64.7
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 5.0e-241 837.8 700 64.1
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 8.5e-241 837.0 700 64.3
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 8.5e-241 837.0 701 64.5
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 8.5e-241 837.0 692 64.6
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 8.5e-241 837.0 699 64.2
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 8.5e-241 837.0 699 64.2
HanXRQChr17g0564051 Helianthus annuus HOM05D003704 ORTHO05D005892 1.5e-240 836.3 695 64.6
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 2.5e-240 835.5 700 64.0
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 2.5e-240 835.5 694 64.6
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 4.2e-240 834.7 700 63.7
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 5.5e-240 834.3 700 64.4
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 1.2e-239 833.2 694 63.5
FAN10G3548 Fragaria x ananassa HOM05D003704 ORTHO05D005892 3.6e-239 831.6 700 63.9
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 8.0e-239 830.5 701 63.1
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 1.8e-238 829.3 697 63.0
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 4.0e-238 828.2 700 63.7
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 6.8e-238 827.4 700 63.6
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 6.8e-238 827.4 700 63.4
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 6.8e-238 827.4 696 63.8
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 1.2e-237 826.6 700 63.4
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 1.2e-237 826.6 701 63.8
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 3.4e-237 825.1 701 62.6
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 7.5e-237 823.9 701 63.6
DCAR_003239 Daucus carota HOM05D003704 ORTHO05D005892 1.3e-236 823.2 685 63.8
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 1.7e-236 822.8 696 63.5
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 1.1e-235 820.1 697 62.0
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 4.1e-235 818.1 697 61.8
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 9.1e-235 817.0 691 61.6
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 2.0e-234 815.8 693 64.2
SGA_v2.0_scaffold5G02930 Striga asiatica HOM05D003704 ORTHO05D005892 2.7e-234 815.5 700 62.6
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 3.5e-234 815.1 700 62.1
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 1.0e-233 813.5 696 62.1
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 6.5e-233 810.8 698 63.5
Lsat_1_v5_gn_4_29820 Lactuca sativa HOM05D003704 ORTHO05D005892 1.9e-232 809.3 695 62.0
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 1.9e-232 809.3 691 62.2
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 7.2e-232 807.4 691 62.4
A05p07400 Brassica napus HOM05D003704 ORTHO05D005892 9.4e-232 807.0 691 61.8
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 1.2e-231 806.6 691 61.8
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 1.2e-231 806.6 691 61.8
BcaNung07214 Brassica carinata HOM05D003704 ORTHO05D005892 2.1e-231 805.8 691 61.6
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 6.1e-231 804.3 704 61.6
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 1.4e-230 803.1 691 61.4
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 4.0e-230 801.6 691 61.5
Psat6g100680 Pisum sativum HOM05D003704 ORTHO05D005892 1.5e-229 799.7 700 61.4
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 5.7e-229 797.7 691 61.4
BcaC02g07445 Brassica carinata HOM05D003704 ORTHO05D005892 1.7e-228 796.2 691 60.9
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 1.7e-228 796.2 691 60.9
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 3.7e-228 795.0 691 61.9
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 6.3e-228 794.3 691 61.5
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 1.1e-227 793.5 691 60.9
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 1.8e-227 792.7 691 61.6
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 3.1e-227 792.0 691 61.5
Zm00001eb018810 Zea mays HOM05D003704 ORTHO05D005892 1.5e-224 783.1 699 58.8
ATR0564G498 Amborella trichopoda HOM05D003704 ORTHO05D005892 1.6e-223 779.6 703 59.0
CDE02G2053 Ceratophyllum demersum HOM05D003704 ORTHO05D005892 3.1e-214 748.8 690 58.0
MD02G1293400 Malus domestica HOM05D003704 ORTHO05D005892 9.5e-208 727.2 570 67.2
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 1.9e-200 703.0 694 56.2
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 1.1e-198 697.2 606 62.2
GSVIVG01000835001 Vitis vinifera HOM05D003704 ORTHO05D005892 1.4e-195 686.8 715 55.9
Cpa.g.sc2782.1 Carica papaya HOM05D003704 ORTHO05D005892 1.6e-186 656.8 603 61.0
GSVIVG01029933001 Vitis vinifera HOM05D003704 ORTHO05D005892 1.5e-184 650.2 589 61.5
Mapoly0170s0020 Marchantia polymorpha HOM05D003704 ORTHO05D005892 4.3e-176 622.1 700 49.1
HPP92_001562 Vanilla planifolia HOM05D003704 ORTHO05D005892 1.3e-175 620.5 671 50.8
AagrBONN_evm.TU.Sc2ySwM_344.1100 Anthoceros agrestis HOM05D003704 ORTHO05D005892 1.7e-172 610.1 706 48.2
Pp3c21_9820 Physcomitrium patens HOM05D003704 ORTHO05D005892 2.1e-167 593.2 697 46.3
QL01p034778 Quercus lobata HOM05D003704 ORTHO05D005892 7.9e-162 574.7 444 70.9
unitig_21.g20277 Utricularia gibba HOM05D003704 ORTHO05D005892 1.3e-153 547.4 510 58.0
SMO230G0016 Selaginella moellendorffii HOM05D003704 ORTHO05D005892 1.4e-147 527.3 681 44.2
CBR_g49869 Chara braunii HOM05D003704 ORTHO05D005892 5.5e-147 525.4 774 40.4
Gohir.D08G245500 Gossypium hirsutum HOM05D003704 ORTHO05D005892 4.2e-123 446.0 347 65.4
Aqoxy263s004 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 1.6e-114 417.5 311 67.8
SEGI_35696 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 1.6e-114 417.5 448 50.4
Gohir.D08G245550 Gossypium hirsutum HOM05D003704 ORTHO05D005892 3.0e-113 413.3 288 75.0
Aqoxy263s005 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 7.0e-110 402.1 275 75.3
CARHR288720 Cardamine hirsuta HOM05D003704 ORTHO05D005892 5.0e-108 396.0 446 50.7
Cre06.g300750 Chlamydomonas reinhardtii HOM05D003704 ORTHO05D005892 4.1e-102 376.3 962 30.1
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 5.0e-92 342.8 579 39.9
MCO01G629 Micromonas commoda HOM05D003704 ORTHO05D005892 2.1e-90 337.4 705 33.3
SEGI_24800 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 1.0e-84 318.5 257 65.4
PRCOL_00007279 Prasinoderma coloniale HOM05D003704 ORTHO05D005892 7.3e-67 259.2 649 30.8
MBI05_g32454_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 1.7e-55 221.5 149 71.8
HanXRQChr14g0439891 Helianthus annuus HOM05D003704 ORTHO05D005892 3.7e-50 203.8 259 47.9
Glyma.03G048701 Glycine max HOM05D003704 ORTHO05D005892 1.8e-49 201.4 172 58.7
Glyma.U033305 Glycine max HOM05D003704 ORTHO05D005892 1.8e-49 201.4 148 64.9
unitig_21.g20278 Utricularia gibba HOM05D003704 ORTHO05D005892 2.2e-47 194.5 164 61.6
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.9e-46 191.4 719 25.2
Haze_26754 Corylus avellana HOM05D003704 ORTHO05D005892 1.3e-44 185.3 277 37.5
SGA_v2.0_scaffold354G49736 Striga asiatica HOM05D003704 ORTHO05D005892 2.5e-43 181.0 220 48.2
COL.COLO4_37421 Corchorus olitorius HOM05D003704 ORTHO05D005892 1.4e-38 165.2 140 65.0
Gorai.010G147800 Gossypium raimondii HOM05D003704 ORTHO05D005892 2.1e-37 161.4 144 62.5
RcHm_v2.0_Chr1g0320421 Rosa chinensis HOM05D003704 ORTHO05D017707 1.5e-32 145.2 93 79.6
MD02G1293500 Malus domestica HOM05D003704 ORTHO05D005892 6.5e-31 139.8 88 79.5
Zm00001eb387580 Zea mays HOM05D000068 ORTHO05D013931 1.4e-30 138.7 121 57.0
RcHm_v2.0_Chr1g0320981 Rosa chinensis HOM05D003704 ORTHO05D017707 3.3e-27 127.5 75 86.7
Cpa.g.c47396 Carica papaya HOM05D003704 ORTHO05D005892 4.5e-24 117.1 72 79.2
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 2.5e-22 111.3 108 51.9
BcaB06g28494 Brassica carinata HOM05D003704 ORTHO05D040007 2.7e-21 107.8 84 65.5
C04p60420 Brassica napus HOM05D003704 ORTHO05D040007 2.7e-21 107.8 84 65.5
Sabra16G0112400 Salix brachista HOM05D003704 ORTHO05D017707 6.7e-20 103.2 68 73.5
Sabra18G0029400 Salix brachista HOM05D000117 ORTHO05D017707 6.7e-20 103.2 68 73.5
Sabra11G0114600 Salix brachista HOM05D003704 ORTHO05D017707 2.8e-18 97.8 61 77.0
Sabra17G0036200 Salix brachista HOM05D003704 ORTHO05D017707 2.8e-18 97.8 61 77.0
Sabra16G0122800 Salix brachista HOM05D003704 ORTHO05D017707 1.1e-17 95.9 60 76.7
Sabra16G0231600 Salix brachista HOM05D001895 ORTHO05D002082 1.1e-17 95.9 102 52.9
Zm00001eb178910 Zea mays HOM05D003404 ORTHO05D004052 1.4e-17 95.5 132 42.4
SMO230G0104 Selaginella moellendorffii HOM05D003704 ORTHO05D013439 2.5e-14 84.7 91 51.6
BolC4t27541H Brassica oleracea HOM05D003704 ORTHO05D017707 6.3e-10 70.1 43 81.4


User provided reference genes

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