Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 6.2e-271 937.2 519 100.0
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 9.1e-222 773.9 518 85.1
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 4.0e-209 731.9 519 82.1
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 7.4e-208 727.6 523 79.9
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 8.2e-207 724.2 519 80.5
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 2.2e-204 716.1 520 79.2
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.5e-203 712.6 519 79.0
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 1.2e-202 710.3 518 80.5
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 3.6e-202 708.8 521 79.5
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 2.0e-200 703.0 520 79.2
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 3.7e-199 698.7 520 77.1
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 4.8e-199 698.4 523 78.0
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 5.9e-197 691.4 519 76.9
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 5.0e-196 688.3 518 76.6
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 6.5e-196 688.0 516 78.1
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 2.7e-194 682.6 521 77.0
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 1.5e-192 676.8 519 77.8
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 3.4e-192 675.6 520 76.3
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 7.5e-192 674.5 517 77.2
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 7.5e-192 674.5 517 76.0
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.7e-191 673.3 517 75.6
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 1.1e-190 670.6 523 76.3
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 1.4e-190 670.2 520 76.9
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 2.4e-190 669.5 520 76.9
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 4.1e-190 668.7 522 75.7
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 1.2e-189 667.2 545 71.6
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.5e-189 665.6 532 74.6
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 1.0e-188 664.1 520 77.3
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 1.7e-188 663.3 521 76.4
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.3e-188 662.9 532 74.2
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 1.9e-187 659.8 523 75.7
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 1.9e-187 659.8 522 74.5
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 2.0e-184 649.8 480 78.1
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 3.4e-184 649.0 520 75.0
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 7.0e-182 641.3 519 72.3
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 1.6e-181 640.2 486 75.7
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 3.5e-181 639.0 520 71.3
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 7.8e-181 637.9 517 75.0
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 1.7e-180 636.7 519 74.2
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 3.9e-180 635.6 522 73.6
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 8.6e-180 634.4 486 75.3
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 1.6e-178 630.2 535 69.7
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.8e-178 629.4 519 73.2
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 3.6e-178 629.0 519 70.7
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 3.6e-178 629.0 519 70.7
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 8.0e-178 627.9 519 72.1
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.4e-177 627.1 520 72.3
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 8.9e-177 624.4 521 72.4
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 1.3e-175 620.5 518 70.5
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 2.2e-175 619.8 520 69.6
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 3.7e-175 619.0 519 71.7
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 2.4e-174 616.3 520 72.9
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 7.0e-174 614.8 541 69.7
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 1.2e-173 614.0 484 71.9
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 2.0e-173 613.2 520 70.6
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 4.6e-173 612.1 484 71.7
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 3.0e-172 609.4 519 69.6
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 3.9e-172 609.0 531 68.0
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 1.5e-171 607.1 519 69.2
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 1.9e-171 606.7 522 69.2
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 7.3e-171 604.7 513 72.7
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 6.2e-170 601.7 517 71.8
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 1.8e-169 600.1 486 70.6
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 3.1e-169 599.4 535 69.2
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 2.0e-168 596.7 403 81.1
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 3.4e-168 595.9 484 73.3
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 9.8e-168 594.3 484 73.3
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 3.7e-167 592.4 522 69.0
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 1.9e-166 590.1 521 70.2
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 5.4e-166 588.6 519 67.8
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 5.1e-164 582.0 519 67.2
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 8.6e-164 581.3 483 73.3
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 4.3e-163 578.9 521 67.8
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 1.6e-162 577.0 386 83.9
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.6e-162 577.0 398 82.2
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 6.2e-162 575.1 494 68.4
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 2.6e-160 569.7 520 65.8
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 2.6e-160 569.7 530 65.3
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.2e-159 566.6 398 78.9
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 6.6e-156 555.1 517 66.7
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.1e-153 547.7 431 74.7
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 2.0e-152 543.5 500 65.6
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 1.1e-150 537.7 484 67.1
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 2.4e-150 536.6 521 64.5
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 6.0e-149 531.9 519 63.0
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 5.1e-148 528.9 484 66.9
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 2.9e-143 513.1 519 59.7
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 6.4e-143 511.9 434 71.7
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 6.0e-141 505.4 552 58.7
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 3.3e-131 473.0 484 61.6
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 3.0e-124 449.9 379 74.7
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 7.6e-120 435.3 522 52.5
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 6.5e-119 432.2 377 71.9
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.6e-117 427.6 386 71.0
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 2.3e-116 423.7 464 61.9
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 6.7e-116 422.2 342 74.6
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 7.4e-115 418.7 381 69.8
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 6.9e-113 412.1 418 64.4
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 2.0e-112 410.6 370 69.2
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 1.7e-111 407.5 388 66.5
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 2.8e-106 390.2 345 71.0
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 1.2e-104 384.8 501 52.1
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 1.5e-104 384.4 307 73.0
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 7.5e-91 339.0 267 73.4
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 3.1e-89 333.6 269 76.2
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 4.1e-89 333.2 558 46.1
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 7.7e-88 328.9 269 75.5
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 8.8e-84 315.5 376 56.6
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 7.7e-80 302.4 558 43.4
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.3e-71 275.0 352 56.0
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 1.2e-67 261.9 305 56.4
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 2.9e-66 257.3 372 51.3
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 4.7e-61 240.0 154 79.2
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 1.5e-59 235.0 245 57.1
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 4.4e-59 233.4 128 90.6
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 8.3e-58 229.2 128 89.8
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 3.3e-54 217.2 494 41.1
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 1.4e-52 211.8 128 86.7
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.6e-51 207.6 353 45.3
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 2.7e-40 171.0 120 83.3
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 2.3e-39 167.9 162 60.5
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 1.9e-38 164.9 115 80.9
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.8e-37 161.0 84 94.0
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 3.8e-34 150.6 145 62.1
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 6.4e-34 149.8 116 72.4
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 1.2e-32 145.6 513 31.4
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 7.1e-25 119.8 285 34.7
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 3.9e-23 114.0 82 74.4
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 3.3e-22 110.9 91 65.9
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 9.6e-22 109.4 72 77.8
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 2.1e-21 108.2 78 80.8
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.1e-20 104.4 66 81.8
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.9e-18 97.1 79 72.2
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 9.3e-17 92.8 64 79.7
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.1e-14 85.9 414 30.0
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 3.7e-13 80.9 50 80.0
Actinidia12052 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.0e-07 62.8 49 67.3
unitig_899.g14663 Utricularia gibba HOM05D005490 ORTHO05D006606 1.8e-07 62.0 97 44.3
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 4.3e-06 57.4 324 27.5


User provided reference genes

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