Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 2.3e-48 195.3 100 100.0
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 1.6e-30 136.0 73 94.5
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 2.9e-19 98.6 74 67.6
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 3.2e-18 95.1 77 68.8
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 1.6e-17 92.8 76 64.5
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 4.6e-17 91.3 71 69.0
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.3e-16 89.7 68 69.1
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.3e-16 89.0 73 64.4
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 2.3e-16 89.0 74 60.8
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 5.1e-16 87.8 79 59.5
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 5.1e-16 87.8 74 63.5
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 5.1e-16 87.8 63 73.0
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 5.1e-16 87.8 74 59.5
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 6.7e-16 87.4 70 61.4
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 8.7e-16 87.0 72 66.7
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 1.1e-15 86.7 69 66.7
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.1e-15 86.7 68 67.6
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 1.1e-15 86.7 58 77.6
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 1.9e-15 85.9 68 67.6
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 2.5e-15 85.5 74 64.9
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 3.3e-15 85.1 74 63.5
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 7.4e-15 84.0 69 60.9
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 1.3e-14 83.2 57 71.9
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 2.1e-14 82.4 68 61.8
Oeu033661.1 Olea europaea HOM05D008093 ORTHO05D009840 4.8e-14 81.3 71 59.2
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 4.8e-14 81.3 66 65.2
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 4.8e-14 81.3 85 51.8
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 6.2e-14 80.9 84 48.8
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 8.1e-14 80.5 83 51.8
Prupe.7G152300 Prunus persica HOM05D008093 ORTHO05D009840 1.1e-13 80.1 84 56.0
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.4e-13 79.7 60 73.3
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 2.4e-13 79.0 74 60.8
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 2.4e-13 79.0 60 71.7
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 2.4e-13 79.0 52 78.8
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 2.4e-13 79.0 70 54.3
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 3.1e-13 78.6 60 71.7
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 3.1e-13 78.6 60 71.7
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 4.0e-13 78.2 72 55.6
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 4.0e-13 78.2 65 61.5
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 5.3e-13 77.8 52 76.9
Nn5g28574 Nelumbo nucifera HOM05D008093 ORTHO05D009840 5.3e-13 77.8 67 59.7
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 5.3e-13 77.8 66 60.6
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 1.2e-12 76.6 52 75.0
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 1.2e-12 76.6 61 62.3
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 1.2e-12 76.6 68 54.4
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.5e-12 76.3 78 53.8
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 2.0e-12 75.9 61 62.3
Aqoxy5G02237 Aquilegia oxysepala HOM05D008093 ORTHO05D009840 2.6e-12 75.5 56 66.1
AUR62006838 Chenopodium quinoa HOM05D008093 ORTHO05D009840 4.5e-12 74.7 65 63.1
Eucgr.L03270 Eucalyptus grandis HOM05D008093 ORTHO05D009840 7.6e-12 73.9 67 59.7
arahy.Tifrunner.gnm1.ann1.IYM9ZI Arachis hypogaea HOM05D008093 ORTHO05D009840 2.2e-11 72.4 58 62.1
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 3.8e-11 71.6 73 50.7
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 4.9e-11 71.2 58 63.8
Lj4g0016515 Lotus japonicus HOM05D008093 ORTHO05D009840 6.5e-11 70.9 59 59.3
Medtr8g093620 Medicago truncatula HOM05D008093 ORTHO05D009840 1.1e-10 70.1 67 56.7
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 2.5e-10 68.9 58 62.1
Ca_17640_v3 Cicer arietinum L. HOM05D008093 ORTHO05D009840 3.2e-10 68.6 53 66.0
MBI06_g29669_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 1.2e-09 66.6 65 52.3
Lalb_Chr07g0184461 Lupinus albus HOM05D008093 ORTHO05D009840 1.6e-09 66.2 61 55.7
Lalb_Chr12g0203141 Lupinus albus HOM05D008093 ORTHO05D009840 1.6e-09 66.2 68 51.5
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 1.6e-09 66.2 47 68.1
Psat7g045640 Pisum sativum HOM05D008093 ORTHO05D009840 2.7e-09 65.5 53 60.4
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 6.0e-09 64.3 55 58.2
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 1.3e-08 63.2 73 43.8
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 2.3e-08 62.4 56 55.4
THA.LOC104819498 Tarenaya hassleriana HOM05D010996 ORTHO05D009840 3.9e-08 61.6 49 61.2
GSVIVG01026494001 Vitis vinifera HOM05D008093 ORTHO05D009840 5.1e-08 61.2 50 56.0
A01p04810 Brassica napus HOM05D010996 ORTHO05D009840 6.7e-08 60.8 71 43.7
A03p62020 Brassica napus HOM05D010996 ORTHO05D009840 6.7e-08 60.8 71 43.7
BraA01t00464Z Brassica rapa HOM05D010996 ORTHO05D009840 6.7e-08 60.8 71 43.7
BraA03t15242Z Brassica rapa HOM05D010996 ORTHO05D009840 6.7e-08 60.8 71 43.7
C01p05220 Brassica napus HOM05D010996 ORTHO05D009840 8.7e-08 60.5 50 58.0
BolC1t00501H Brassica oleracea HOM05D010996 ORTHO05D009840 8.7e-08 60.5 50 58.0
TPR.G6325 Trifolium pratense HOM05D009255 ORTHO05D011239 8.7e-08 60.5 68 42.6
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 8.7e-08 60.5 61 52.5
BcaC09g52160 Brassica carinata HOM05D010996 ORTHO05D009840 1.1e-07 60.1 48 62.5
BcaNung02175 Brassica carinata HOM05D010996 ORTHO05D009840 1.1e-07 60.1 71 43.7
Thhalv10026675m.g Eutrema salsugineum HOM05D010996 ORTHO05D009840 1.9e-07 59.3 47 61.7
arahy.Tifrunner.gnm1.ann1.Y5JHNR Arachis hypogaea HOM05D008093 ORTHO05D009840 2.5e-07 58.9 47 61.7
ATR1136G205 Amborella trichopoda HOM05D008093 ORTHO05D009840 3.3e-07 58.5 53 52.8
AT4G33467 Arabidopsis thaliana HOM05D010996 ORTHO05D009840 4.3e-07 58.2 68 44.1
Phvul.009G134100 Phaseolus vulgaris HOM05D009255 ORTHO05D011239 4.3e-07 58.2 62 45.2
AL7G18090 Arabidopsis lyrata HOM05D010996 ORTHO05D009840 5.7e-07 57.8 68 42.6
BcaNung05339 Brassica carinata HOM05D000119 ORTHO05D000054 7.4e-07 57.4 50 58.0
C07p59670 Brassica napus HOM05D010996 ORTHO05D009840 7.4e-07 57.4 71 42.3
BolC7t46412H Brassica oleracea HOM05D010996 ORTHO05D009840 7.4e-07 57.4 65 44.6
Cpa.g.sc42.146 Carica papaya HOM05D008093 ORTHO05D009840 9.6e-07 57.0 49 63.3
VMungo1309G1730 Vigna mungo HOM05D009255 ORTHO05D011239 1.3e-06 56.6 62 41.9
Carub.0007s0701 Capsella rubella HOM05D010996 ORTHO05D009840 1.6e-06 56.2 47 55.3
Lj1g0001909 Lotus japonicus HOM05D009255 ORTHO05D011239 1.6e-06 56.2 70 47.1
Sp7g31170 Schrenkiella parvula HOM05D010996 ORTHO05D009840 1.6e-06 56.2 50 58.0
Aa31sc146G10 Aethionema arabicum HOM05D010996 ORTHO05D009840 2.1e-06 55.8 48 56.2
CARHR241540 Cardamine hirsuta HOM05D010996 ORTHO05D009840 2.1e-06 55.8 50 52.0
Lj1g0023437 Lotus japonicus HOM05D009255 ORTHO05D011239 6.2e-06 54.3 70 44.3
Psat5g082600 Pisum sativum HOM05D009255 ORTHO05D011239 6.2e-06 54.3 66 43.9


User provided reference genes

Program Settings