Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 2.7e-112 408.7 210 100.0
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.0e-83 312.8 190 84.2
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.6e-70 269.2 197 69.5
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 7.5e-70 267.7 189 70.9
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.7e-69 266.5 158 86.7
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 5.4e-68 261.5 188 69.7
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 7.1e-68 261.2 179 70.4
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 3.5e-67 258.8 193 65.8
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 4.6e-67 258.5 189 68.3
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 7.8e-67 257.7 185 67.6
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 7.8e-67 257.7 189 66.7
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.7e-66 256.5 193 69.9
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 2.3e-66 256.1 191 69.1
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 3.9e-66 255.4 191 67.5
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 6.6e-66 254.6 195 64.1
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 8.6e-66 254.2 188 67.6
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.1e-65 253.8 186 66.1
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.5e-65 253.4 202 62.4
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 2.5e-65 252.7 191 67.0
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 9.6e-65 250.8 188 65.4
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.2e-64 250.4 195 64.6
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.2e-64 250.4 188 66.0
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.2e-64 250.4 185 64.9
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.1e-64 249.6 193 66.8
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.1e-64 249.6 195 65.1
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.8e-64 249.2 185 64.3
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 3.6e-64 248.8 188 66.5
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 6.2e-64 248.1 195 64.6
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 8.1e-64 247.7 195 64.1
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.1e-63 247.3 189 64.6
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.4e-63 246.9 195 64.6
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.4e-63 246.9 181 65.7
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.4e-63 246.9 204 60.3
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.8e-63 246.5 188 64.4
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.8e-63 246.5 182 67.0
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.8e-63 246.5 188 67.0
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 2.4e-63 246.1 207 61.4
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.4e-63 246.1 189 65.6
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 3.1e-63 245.7 189 66.1
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 3.1e-63 245.7 189 64.6
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 3.1e-63 245.7 189 64.6
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.2e-63 245.0 191 66.5
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 1.5e-62 243.4 188 66.0
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 2.6e-62 242.7 174 67.2
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 2.6e-62 242.7 185 63.8
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 4.4e-62 241.9 188 65.4
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 4.4e-62 241.9 174 67.2
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 5.8e-62 241.5 189 65.1
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.3e-61 240.4 179 67.0
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.3e-61 240.4 179 67.0
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.3e-61 240.4 180 65.6
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.3e-61 240.4 188 62.2
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.3e-61 240.4 185 63.2
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.3e-61 240.4 195 63.1
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.2e-61 239.6 182 64.3
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.9e-61 239.2 179 66.5
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 2.9e-61 239.2 195 62.6
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 6.4e-61 238.0 178 66.9
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 6.4e-61 238.0 178 66.9
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 8.4e-61 237.7 195 63.1
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 8.4e-61 237.7 180 66.7
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.1e-60 237.3 182 64.3
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.9e-60 236.5 212 58.5
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 2.4e-60 236.1 171 70.2
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 2.4e-60 236.1 214 57.0
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.6e-59 233.4 182 63.2
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.6e-59 233.4 212 59.4
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 3.5e-59 232.3 174 64.4
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.5e-59 232.3 188 63.3
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 6.0e-59 231.5 191 61.3
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 6.0e-59 231.5 177 63.3
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 6.0e-59 231.5 175 68.0
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 7.8e-59 231.1 177 62.7
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.3e-58 230.3 185 60.5
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.1e-58 228.4 192 63.0
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 6.6e-58 228.0 176 65.9
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.9e-57 226.5 190 62.1
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.3e-57 225.3 171 64.3
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 4.3e-57 225.3 219 55.3
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 9.6e-57 224.2 199 58.3
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 9.6e-57 224.2 168 64.3
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 1.3e-56 223.8 167 64.1
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.1e-56 223.0 172 65.7
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 4.8e-56 221.9 150 74.7
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 6.2e-56 221.5 184 62.0
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.1e-55 220.7 182 59.9
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 1.8e-55 219.9 187 57.8
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 9.0e-55 217.6 190 60.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 2.0e-54 216.5 190 59.5
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 3.4e-54 215.7 215 54.4
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 2.2e-53 213.0 183 60.7
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 6.4e-53 211.5 191 57.6
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 3.2e-52 209.1 157 66.9
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.2e-51 207.2 190 58.4
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 4.6e-51 205.3 165 64.2
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.8e-51 204.5 199 59.3
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.3e-50 203.8 185 56.2
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 5.1e-50 201.8 179 55.9
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 4.8e-48 195.3 162 64.8
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.1e-47 194.1 178 60.1
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 9.0e-47 191.0 164 62.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.2e-46 190.7 164 62.8
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.2e-46 190.7 178 57.3
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 3.4e-46 189.1 159 64.2
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.4e-44 183.0 188 50.0
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.2e-44 182.6 270 42.6
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 9.3e-44 181.0 172 52.9
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 6.7e-42 174.9 145 58.6
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 1.5e-41 173.7 167 50.9
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.9e-41 173.3 254 43.3
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.3e-40 170.6 208 51.0
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 1.6e-40 170.2 176 58.0
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 9.0e-39 164.5 188 45.7
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.2e-38 164.1 145 60.7
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 4.5e-38 162.2 129 65.9
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.3e-37 160.6 124 66.1
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.5e-36 156.4 189 46.6
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.1e-33 147.5 182 42.9
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.4e-28 130.6 176 43.2
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.1e-27 126.7 92 67.4
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 7.9e-27 124.8 114 60.5
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.0e-26 124.4 174 45.4
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 5.1e-26 122.1 96 60.4
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 2.8e-24 116.3 164 42.7
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.2e-21 106.7 111 54.1
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 8.5e-21 104.8 178 38.8
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 4.2e-20 102.4 99 54.5
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 3.6e-19 99.4 100 52.0
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.9e-18 95.9 84 57.1
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 4.3e-17 92.4 175 34.9
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 2.4e-15 86.7 84 57.1
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 4.1e-15 85.9 172 31.4
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.7e-14 81.6 130 40.0
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 3.8e-13 79.3 66 60.6
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 1.9e-12 77.0 85 49.4
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 1.9e-12 77.0 130 39.2
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.2e-12 76.3 58 65.5
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 2.1e-11 73.6 78 51.3
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 7.9e-11 71.6 53 62.3
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.9e-11 71.6 75 57.3
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 4.4e-09 65.9 177 26.0
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 7.4e-09 65.1 158 31.0
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 1.1e-07 61.2 67 50.7
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 1.8e-07 60.5 86 40.7


User provided reference genes

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