Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 5.7e-141 504.2 251 100.0
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 1.1e-107 393.7 233 85.8
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 8.1e-103 377.5 213 87.8
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 1.3e-100 370.2 233 80.7
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 1.1e-99 367.1 233 77.7
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 1.1e-99 367.1 233 79.0
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 1.9e-99 366.3 233 79.8
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 9.3e-99 364.0 233 76.8
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 1.6e-98 363.2 233 78.1
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 3.5e-98 362.1 233 77.7
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 3.5e-98 362.1 233 78.5
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 3.5e-98 362.1 233 77.7
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 6.0e-98 361.3 233 77.3
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 6.0e-98 361.3 233 77.7
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 7.8e-98 360.9 233 77.7
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.0e-97 360.5 233 76.4
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 1.3e-97 360.1 233 76.8
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 1.7e-97 359.8 233 77.7
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 2.3e-97 359.4 233 76.0
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 3.9e-97 358.6 233 78.1
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 3.9e-97 358.6 233 76.8
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 3.9e-97 358.6 233 76.4
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 3.9e-97 358.6 233 76.4
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 5.1e-97 358.2 233 77.3
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 6.6e-97 357.8 233 76.8
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 8.7e-97 357.5 233 76.8
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 8.7e-97 357.5 233 76.0
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 1.1e-96 357.1 233 76.4
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 1.1e-96 357.1 233 77.7
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 1.1e-96 357.1 213 82.2
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 1.1e-96 357.1 233 76.8
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 1.1e-96 357.1 233 76.0
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 1.5e-96 356.7 233 76.8
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 2.5e-96 355.9 233 77.3
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 2.5e-96 355.9 233 76.0
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 3.3e-96 355.5 233 76.8
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 3.3e-96 355.5 233 75.5
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 3.3e-96 355.5 233 75.5
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 7.3e-96 354.4 233 76.4
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 7.3e-96 354.4 233 74.7
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 1.3e-95 353.6 233 75.5
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 2.1e-95 352.8 233 74.2
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 2.1e-95 352.8 233 74.2
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 2.8e-95 352.4 233 76.0
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 2.8e-95 352.4 233 75.5
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 2.8e-95 352.4 233 76.4
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 3.6e-95 352.1 233 74.2
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 4.8e-95 351.7 233 76.0
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 4.8e-95 351.7 232 76.3
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 8.1e-95 350.9 233 74.2
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 1.1e-94 350.5 233 76.0
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 1.1e-94 350.5 233 76.0
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 1.4e-94 350.1 233 75.1
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 1.8e-94 349.7 233 73.4
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 5.3e-94 348.2 233 73.4
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 6.9e-94 347.8 233 72.5
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 9.0e-94 347.4 233 75.1
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 9.0e-94 347.4 233 73.4
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 9.0e-94 347.4 233 74.2
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 1.2e-93 347.1 233 72.5
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 1.5e-93 346.7 233 73.8
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 2.0e-93 346.3 233 73.8
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 2.0e-93 346.3 233 74.2
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 2.6e-93 345.9 233 73.0
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 3.4e-93 345.5 233 73.0
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 3.4e-93 345.5 233 74.2
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 4.4e-93 345.1 233 72.5
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 5.8e-93 344.7 233 72.1
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 5.8e-93 344.7 233 72.5
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 5.8e-93 344.7 233 72.5
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 5.8e-93 344.7 233 72.5
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 5.8e-93 344.7 233 73.0
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 1.3e-92 343.6 233 72.1
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 1.3e-92 343.6 233 73.4
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 1.3e-92 343.6 233 74.7
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 1.7e-92 343.2 233 71.7
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 1.7e-92 343.2 233 71.7
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 1.7e-92 343.2 233 72.1
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 1.7e-92 343.2 233 73.8
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 2.2e-92 342.8 233 73.4
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 2.2e-92 342.8 233 73.8
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 2.9e-92 342.4 233 71.7
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 3.8e-92 342.0 233 71.7
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 8.4e-92 340.9 233 72.5
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 1.1e-91 340.5 233 73.8
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 1.4e-91 340.1 233 72.1
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 1.9e-91 339.7 233 71.7
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 1.9e-91 339.7 233 73.0
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 2.4e-91 339.3 233 72.1
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 5.4e-91 338.2 233 71.7
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 7.1e-91 337.8 233 71.2
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 9.3e-91 337.4 233 72.5
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 1.2e-90 337.0 233 72.1
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 1.6e-90 336.7 233 70.8
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 2.1e-90 336.3 233 72.5
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 2.1e-90 336.3 233 70.4
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 6.6e-89 331.3 233 70.8
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 8.7e-89 330.9 233 70.4
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 2.5e-88 329.3 233 69.5
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 2.5e-88 329.3 228 71.9
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 8.1e-79 297.7 233 64.8
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 5.8e-77 291.6 233 63.5
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 1.0e-76 290.8 233 62.7
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 1.0e-76 290.8 233 62.7
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 1.9e-75 286.6 233 62.7
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 1.0e-73 280.8 233 61.8
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 1.6e-71 273.5 185 73.5
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 2.8e-71 272.7 233 60.1
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 8.2e-71 271.2 190 72.1
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 5.3e-70 268.5 141 96.5
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 5.0e-68 261.9 211 67.3
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 1.6e-63 246.9 235 54.0
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 1.4e-57 227.3 238 51.7
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 3.9e-57 225.7 121 86.0
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 3.3e-56 222.6 164 72.6
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 4.8e-55 218.8 158 70.9
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 9.4e-51 204.5 236 46.6
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 3.0e-49 199.5 244 45.1
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 8.8e-49 198.0 121 74.4
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 3.5e-45 186.0 236 43.6
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 3.6e-42 176.0 208 49.5
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 2.1e-34 150.2 89 83.1
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 7.2e-27 125.2 77 75.3
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.5e-16 90.9 67 67.2
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 1.3e-15 87.8 60 71.7
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 6.4e-15 85.5 50 82.0
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 1.8e-14 84.0 48 83.3
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.2e-13 81.3 84 58.3
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 3.9e-12 76.3 75 57.3
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 3.9e-12 76.3 48 77.1
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 5.8e-08 62.4 237 27.4
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 2.2e-07 60.5 36 77.8
PRCOL_00006365 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 5.4e-06 55.8 111 32.4


User provided reference genes

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