Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.5e-50 202.6 103 100.0
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 8.3e-46 186.8 99 97.0
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.1e-45 186.4 98 98.0
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 4.3e-42 174.5 98 89.8
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.6e-41 171.4 98 86.7
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 2.6e-39 165.2 98 83.7
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.6e-39 165.2 99 84.8
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 5.8e-39 164.1 98 84.7
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 5.8e-39 164.1 98 84.7
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 9.8e-39 163.3 98 84.7
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 9.8e-39 163.3 98 84.7
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.3e-38 162.9 98 82.7
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.3e-38 162.9 98 82.7
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.2e-38 162.2 98 83.7
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.9e-38 161.8 98 82.7
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 4.9e-38 161.0 98 83.7
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 4.9e-38 161.0 99 81.8
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.4e-37 159.5 98 82.7
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.4e-37 159.5 97 84.5
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.4e-37 158.7 98 79.6
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 4.1e-37 157.9 95 83.2
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 4.1e-37 157.9 98 80.6
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 4.1e-37 157.9 97 81.4
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.1e-37 157.9 98 78.6
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 5.4e-37 157.5 98 81.6
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.2e-37 156.8 98 81.6
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 1.2e-36 156.4 95 81.1
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 1.2e-36 156.4 98 80.6
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.6e-36 156.0 97 81.4
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.1e-36 155.6 98 77.6
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.7e-36 155.2 94 81.9
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.7e-36 155.2 98 79.6
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 3.5e-36 154.8 98 80.6
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 3.5e-36 154.8 98 79.6
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 3.5e-36 154.8 98 79.6
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.5e-36 154.8 98 76.5
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 3.5e-36 154.8 98 79.6
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 4.6e-36 154.5 98 80.6
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.6e-36 154.5 98 79.6
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 4.6e-36 154.5 98 80.6
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 6.0e-36 154.1 98 79.6
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 6.0e-36 154.1 98 80.6
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 6.0e-36 154.1 94 83.0
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.0e-35 153.3 98 79.6
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.0e-35 153.3 98 78.6
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.0e-35 153.3 98 77.6
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.3e-35 152.9 98 77.6
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.3e-35 152.9 98 78.6
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.7e-35 152.5 98 80.6
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.7e-35 152.5 98 77.6
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 2.3e-35 152.1 97 78.4
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 2.3e-35 152.1 98 77.6
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.9e-35 151.4 98 78.6
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 6.6e-35 150.6 98 77.6
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.1e-34 149.8 98 77.6
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.9e-34 149.1 98 77.6
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.9e-34 149.1 98 77.6
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.9e-34 149.1 98 77.6
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 2.5e-34 148.7 98 76.5
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 4.3e-34 147.9 98 73.5
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 4.3e-34 147.9 95 76.8
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 5.6e-34 147.5 95 74.7
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 5.6e-34 147.5 98 75.5
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 5.6e-34 147.5 98 75.5
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 5.6e-34 147.5 94 76.6
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.6e-34 147.5 97 75.3
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.3e-34 147.1 98 76.5
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 9.5e-34 146.7 98 74.5
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 9.5e-34 146.7 99 77.8
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 9.5e-34 146.7 94 76.6
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 1.2e-33 146.4 98 76.5
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.2e-33 146.4 98 74.5
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.6e-33 146.0 98 76.5
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 2.1e-33 145.6 98 75.5
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.1e-33 145.6 95 76.8
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.1e-33 145.6 98 73.5
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 2.8e-33 145.2 97 75.3
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.6e-33 144.8 95 76.8
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 3.6e-33 144.8 95 76.8
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 6.2e-33 144.1 98 73.5
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 8.1e-33 143.7 98 73.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.1e-33 143.7 98 79.6
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 8.1e-33 143.7 97 74.2
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.1e-33 143.7 95 75.8
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 8.1e-33 143.7 94 76.6
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.4e-32 142.9 98 72.4
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.4e-32 142.9 98 72.4
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.4e-32 142.9 97 74.2
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.4e-32 142.9 97 73.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.4e-32 142.9 97 73.2
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.3e-32 142.1 97 75.3
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 3.1e-32 141.7 98 73.5
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 4.0e-32 141.4 95 73.7
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 6.8e-32 140.6 97 70.1
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 8.9e-32 140.2 95 70.5
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 8.9e-32 140.2 97 70.1
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 2.0e-31 139.0 94 73.4
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.0e-31 139.0 98 72.4
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.0e-31 139.0 94 73.4
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 4.4e-31 137.9 95 71.6
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 9.9e-31 136.7 97 72.2
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.3e-30 136.3 95 68.4
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.7e-30 136.0 95 68.4
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 1.7e-30 136.0 94 71.3
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 6.4e-30 134.0 112 63.4
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.4e-29 132.9 92 70.7
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.4e-29 132.1 108 65.7
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.4e-29 132.1 108 65.7
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.9e-27 124.8 76 82.9
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 5.1e-27 124.4 76 81.6
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 5.1e-27 124.4 95 65.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.5e-26 122.9 128 55.5
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.5e-26 122.1 128 54.7
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 5.6e-26 120.9 76 80.3
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.2e-21 105.1 76 65.8
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.0e-19 100.1 68 75.0
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.0e-19 100.1 112 51.8
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.9e-18 95.9 70 72.9
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 3.3e-18 95.1 98 48.0
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 5.6e-18 94.4 92 51.1
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 6.9e-16 87.4 98 44.9
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 9.0e-16 87.0 75 58.7
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 2.9e-14 82.0 44 90.9
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 7.8e-12 73.9 37 94.6
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 8.7e-11 70.5 95 42.1
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 3.3e-10 68.6 89 42.7
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.6e-09 66.2 58 56.9
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.5e-07 59.7 68 50.0
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 7.6e-07 57.4 86 31.4
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.3e-06 56.6 60 48.3
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 1.3e-06 56.6 28 96.4
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 2.2e-06 55.8 26 100.0
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.9e-06 55.5 128 33.6
AL3G46510 Arabidopsis lyrata HOM05D000076 ORTHO05D002344 3.8e-06 55.1 43 65.1


User provided reference genes

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