Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p025350 Quercus lobata HOM05D007893 ORTHO05D010042 1.6e-170 604.0 314 100.0
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 4.7e-114 416.4 315 68.3
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 3.5e-109 400.2 314 66.9
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 7.2e-107 392.5 316 69.9
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 1.5e-91 341.7 317 62.1
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 9.2e-86 322.4 299 55.9
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 2.3e-84 317.8 317 53.9
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 2.3e-84 317.8 308 53.9
arahy.Tifrunner.gnm1.ann1.40GBPJ Arachis hypogaea HOM05D007893 ORTHO05D010042 9.5e-83 312.4 317 53.3
COL.COLO4_16973 Corchorus olitorius HOM05D000070 ORTHO05D007358 9.5e-83 312.4 285 62.5
Glyma.01G016100 Glycine max HOM05D007893 ORTHO05D010042 3.6e-82 310.5 307 54.7
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 1.0e-81 308.9 307 54.1
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.1e-81 307.4 306 55.2
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 8.9e-81 305.8 275 57.1
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 2.6e-80 304.3 325 57.5
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 4.4e-80 303.5 303 53.5
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 1.6e-77 295.0 292 55.1
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 1.7e-76 291.6 316 50.6
ClCG10G008950 Citrullus lanatus HOM05D007893 ORTHO05D010042 2.3e-76 291.2 320 55.6
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 5.2e-73 280.0 308 50.0
VMungo1215G2510 Vigna mungo HOM05D007893 ORTHO05D010042 1.2e-72 278.9 299 51.2
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 4.9e-71 273.5 240 56.7
Psat2g137760 Pisum sativum HOM05D007893 ORTHO05D010042 6.6e-68 263.1 295 49.8
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 6.6e-68 263.1 294 54.8
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 8.6e-68 262.7 241 55.6
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 1.2e-64 252.3 238 60.1
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 2.0e-64 251.5 308 52.9
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 2.0e-64 251.5 308 52.9
PGR042G3148 Punica granatum HOM05D007893 ORTHO05D010042 4.4e-64 250.4 300 53.3
Nn7g37761 Nelumbo nucifera HOM05D007893 ORTHO05D010042 2.2e-63 248.1 301 46.2
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 2.9e-63 247.7 227 56.8
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 4.9e-63 246.9 311 52.1
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 7.1e-62 243.0 295 46.1
MSTRG.23210 Avicennia marina HOM05D007893 ORTHO05D010042 3.0e-60 237.7 242 52.1
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 3.9e-60 237.3 323 44.6
Duzib068G1049 Durio zibethinus HOM05D007893 ORTHO05D010042 6.6e-60 236.5 191 70.7
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 1.5e-59 235.3 313 48.9
Medtr5g029690 Medicago truncatula HOM05D007893 ORTHO05D010042 3.4e-56 224.2 241 51.5
vmacro00309 Vaccinium macrocarpon HOM05D007893 ORTHO05D010042 1.9e-54 218.4 240 53.8
Lj3g0001800 Lotus japonicus HOM05D007893 ORTHO05D010042 3.2e-54 217.6 292 44.5
Lj3g0011187 Lotus japonicus HOM05D007893 ORTHO05D010042 3.2e-54 217.6 292 44.5
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 9.2e-54 216.1 305 46.6
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 9.2e-54 216.1 305 46.6
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 9.2e-54 216.1 305 46.6
Gohir.D08G063700 Gossypium hirsutum HOM05D007893 ORTHO05D010042 1.2e-53 215.7 193 64.2
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.1e-53 214.9 305 46.6
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.1e-53 214.9 305 46.6
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 3.5e-53 214.2 303 42.2
Cc08_g03180 Coffea canephora HOM05D007893 ORTHO05D010042 4.6e-53 213.8 280 50.0
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 3.0e-52 211.1 240 51.2
Nn6g33361 Nelumbo nucifera HOM05D007893 ORTHO05D010042 2.5e-51 208.0 304 41.4
Eucgr.E00255 Eucalyptus grandis HOM05D007893 ORTHO05D010042 4.3e-51 207.2 229 49.3
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 4.3e-51 207.2 299 41.1
Migut.O00264 Erythranthe guttata HOM05D007893 ORTHO05D010042 5.3e-49 200.3 281 47.3
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 4.4e-48 197.2 254 44.5
Oeu023345.1 Olea europaea HOM05D007893 ORTHO05D010042 3.8e-47 194.1 235 46.0
Oeu023344.1 Olea europaea HOM05D007893 ORTHO05D010042 6.4e-47 193.4 235 46.0
Dinv25240 Davidia involucrata HOM05D007893 ORTHO05D010042 1.9e-46 191.8 191 66.5
Manes.04G148100 Manihot esculenta HOM05D007893 ORTHO05D010042 4.3e-43 180.6 272 38.2
Aqoxy4G00051 Aquilegia oxysepala HOM05D007893 ORTHO05D010042 2.1e-42 178.3 189 49.7
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 8.1e-42 176.4 226 40.3
Hma1.2p1_2831F.1_g329220 Hydrangea macrophylla HOM05D007893 ORTHO05D010042 1.8e-41 175.3 160 69.4
Nitab4.5_0005203g0030 Nicotiana tabacum HOM05D007893 ORTHO05D010042 7.1e-38 163.3 194 46.9
Nitab4.5_0009549g0020 Nicotiana tabacum HOM05D007893 ORTHO05D010042 2.1e-34 151.8 302 36.4
MBI18_g42841_MAGBIO Magnolia biondii HOM05D007893 ORTHO05D010042 2.8e-34 151.4 203 43.3
Peaxi162Scf00265g00033 Petunia axillaris HOM05D007893 ORTHO05D010042 4.5e-32 144.1 191 42.4
SalBow6G7259 Salvia bowleyana HOM05D007893 ORTHO05D010042 4.5e-32 144.1 190 41.6
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 3.5e-29 134.4 196 39.3
Zm00001eb109140 Zea mays HOM05D007893 ORTHO05D010042 1.3e-26 125.9 217 32.3
Sopen00g012250 Solanum pennellii HOM05D007893 ORTHO05D010042 3.7e-26 124.4 161 41.0
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.8e-25 122.1 241 36.1
HPP92_022591 Vanilla planifolia HOM05D007893 ORTHO05D010042 1.8e-25 122.1 244 33.2
Gohir.A08G054000 Gossypium hirsutum HOM05D007893 ORTHO05D010042 1.0e-20 106.3 95 69.5
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 9.7e-19 99.8 112 45.5
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 7.9e-13 80.1 223 34.1
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.9e-12 77.8 224 33.5
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 5.1e-12 77.4 190 23.7
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 1.1e-11 76.3 151 29.8
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 1.5e-11 75.9 177 29.9
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 2.5e-11 75.1 166 30.7
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 2.5e-11 75.1 151 29.8
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 3.3e-11 74.7 215 23.7
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 3.3e-11 74.7 157 29.3
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 5.7e-11 73.9 178 29.2
MELO3C033967.2 Cucumis melo HOM05D007496 ORTHO05D009479 9.7e-11 73.2 222 23.9
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 9.7e-11 73.2 163 29.4
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 1.3e-10 72.8 156 28.8
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 1.3e-10 72.8 145 31.0
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 2.2e-10 72.0 147 29.9
CsaV3_5G017450 Cucumis sativus L. HOM05D007496 ORTHO05D009479 2.2e-10 72.0 180 26.1
ClCG01G007050 Citrullus lanatus HOM05D007496 ORTHO05D009479 2.8e-10 71.6 181 26.5
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 3.7e-10 71.2 188 27.1
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.4e-09 69.3 157 27.4
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 2.4e-09 68.6 188 25.0
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 2.4e-09 68.6 191 27.2
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 4.1e-09 67.8 151 28.5
AUR62017779 Chenopodium quinoa HOM05D007496 ORTHO05D009479 4.1e-09 67.8 151 30.5
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 4.1e-09 67.8 162 26.5
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 5.3e-09 67.4 145 29.0
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 5.3e-09 67.4 204 26.0
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 6.9e-09 67.0 145 29.0
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 6.9e-09 67.0 145 29.0
Actinidia38410 Actinidia chinensis HOM05D007496 ORTHO05D009479 9.1e-09 66.6 141 28.4
CANSAT21G0576 Cannabis sativa HOM05D007496 ORTHO05D009479 9.1e-09 66.6 151 26.5
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 1.5e-08 65.9 172 26.2
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.5e-08 65.9 122 32.0
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 2.0e-08 65.5 116 33.6
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 2.0e-08 65.5 151 27.8
Cc10_g12620 Coffea canephora HOM05D007496 ORTHO05D009479 2.6e-08 65.1 152 28.3
SGA_v2.0_scaffold141G35594 Striga asiatica HOM05D017480 ORTHO05D026194 3.4e-08 64.7 63 52.4
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 4.5e-08 64.3 134 24.6
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 4.5e-08 64.3 202 26.7
Nitab4.5_0000756g0010 Nicotiana tabacum HOM05D007390 ORTHO05D009114 4.5e-08 64.3 156 26.9
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 5.9e-08 63.9 252 23.8
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 5.9e-08 63.9 146 24.7
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 7.7e-08 63.5 139 25.9
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.7e-08 63.5 185 25.9
FAN11G1706 Fragaria x ananassa HOM05D007390 ORTHO05D009114 1.0e-07 63.2 182 26.4
SEGI_11241 Sequoiadendron giganteum HOM05D007496 ORTHO05D009479 1.0e-07 63.2 126 31.7
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 1.3e-07 62.8 168 24.4
ClCG09G021340 Citrullus lanatus HOM05D007390 ORTHO05D009114 1.7e-07 62.4 140 25.7
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 2.2e-07 62.0 97 37.1
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 2.9e-07 61.6 140 25.0
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 3.8e-07 61.2 82 37.8
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 3.8e-07 61.2 84 35.7
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.8e-07 61.2 170 25.9
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 3.8e-07 61.2 144 23.6
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 3.8e-07 61.2 160 25.6
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 5.0e-07 60.8 151 24.5
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 5.0e-07 60.8 192 22.9
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 5.0e-07 60.8 107 31.8
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 5.0e-07 60.8 83 36.1
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 5.0e-07 60.8 83 36.1
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 6.5e-07 60.5 149 25.5
vmacro09644 Vaccinium macrocarpon HOM05D007390 ORTHO05D009114 6.5e-07 60.5 177 26.0
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 8.5e-07 60.1 146 26.0
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 8.5e-07 60.1 84 34.5
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 8.5e-07 60.1 142 26.1
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 1.1e-06 59.7 153 27.5
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 1.1e-06 59.7 107 33.6
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.1e-06 59.7 82 39.0
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 1.1e-06 59.7 146 24.7
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 1.4e-06 59.3 167 28.1
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 1.9e-06 58.9 133 26.3
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 1.9e-06 58.9 149 24.8
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 1.9e-06 58.9 148 25.0
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 1.9e-06 58.9 98 30.6
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 1.9e-06 58.9 177 22.6
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 1.9e-06 58.9 83 39.8
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 1.9e-06 58.9 191 26.7
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 1.9e-06 58.9 151 23.2
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 1.9e-06 58.9 83 33.7
PGR031G0714 Punica granatum HOM05D007390 ORTHO05D009114 2.5e-06 58.5 162 27.2
SHI14851 Sapria himalayana HOM05D007496 ORTHO05D009479 2.5e-06 58.5 151 26.5
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 2.5e-06 58.5 202 21.8
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 2.5e-06 58.5 82 39.0
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 3.2e-06 58.2 147 31.3
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 3.2e-06 58.2 133 27.1
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 3.2e-06 58.2 183 25.7
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 3.2e-06 58.2 136 27.9
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 3.2e-06 58.2 142 25.4
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 3.2e-06 58.2 151 27.8
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 3.2e-06 58.2 151 24.5
SGA_v2.0_scaffold484G52360 Striga asiatica HOM05D017480 ORTHO05D026194 3.2e-06 58.2 50 56.0
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 4.2e-06 57.8 177 23.7
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 4.2e-06 57.8 101 32.7
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 4.2e-06 57.8 88 37.5
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 5.5e-06 57.4 133 27.1
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 5.5e-06 57.4 168 24.4
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 5.5e-06 57.4 102 32.4
Rhsim04G0012100 Rhododendron simsii HOM05D007390 ORTHO05D009114 5.5e-06 57.4 177 24.9
SalBow6G6080 Salvia bowleyana HOM05D007893 ORTHO05D010042 5.5e-06 57.4 136 30.9
CsaV3_3G042310 Cucumis sativus L. HOM05D007390 ORTHO05D009114 7.2e-06 57.0 139 23.0
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 7.2e-06 57.0 117 27.4
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 9.4e-06 56.6 98 30.6
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 9.4e-06 56.6 98 30.6
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 9.4e-06 56.6 131 27.5
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 9.4e-06 56.6 172 22.7
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 9.4e-06 56.6 129 25.6
RcHm_v2.0_Chr6g0300361 Rosa chinensis HOM05D007639 ORTHO05D009509 9.4e-06 56.6 119 31.1


User provided reference genes

Program Settings