Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.3e-174 616.3 326 100.0
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 1.0e-41 174.9 92 95.7
QL04p024660 Quercus lobata HOM05D000331 ORTHO05D000732 2.4e-30 137.1 88 80.7
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 4.5e-29 132.9 92 73.9
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 2.9e-28 130.2 92 71.7
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 1.4e-27 127.9 92 68.5
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 7.2e-27 125.6 92 68.5
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 1.8e-25 120.9 92 66.3
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 2.3e-25 120.6 92 65.2
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 6.7e-25 119.0 92 64.1
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.1e-24 118.2 92 63.0
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.1e-24 118.2 92 63.0
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 3.3e-24 116.7 92 62.0
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 5.7e-24 115.9 92 62.0
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 7.4e-24 115.5 93 62.4
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 2.2e-23 114.0 92 63.0
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 4.8e-23 112.8 92 64.1
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.4e-22 110.5 154 44.8
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 3.1e-22 110.2 97 59.8
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 5.3e-22 109.4 92 58.7
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 5.3e-22 109.4 93 60.2
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 9.1e-22 108.6 92 56.5
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.0e-21 107.5 92 56.5
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 3.5e-21 106.7 93 58.1
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 4.5e-21 106.3 93 58.1
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.7e-20 104.4 93 61.3
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 3.8e-20 103.2 92 54.3
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 5.0e-20 102.8 92 60.9
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 8.5e-20 102.1 99 51.5
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.2e-19 100.1 93 57.0
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 3.2e-19 100.1 92 54.3
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 4.7e-18 96.3 94 53.2
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 8.0e-18 95.5 93 52.7
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.0e-17 95.1 94 53.2
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.3e-17 94.0 93 51.6
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 5.2e-17 92.8 92 56.5
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 5.2e-17 92.8 92 51.1
QL05p029849 Quercus lobata HOM05D007798 ORTHO05D009882 6.7e-17 92.4 51 88.2
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.2e-16 91.7 94 56.4
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 1.5e-16 91.3 156 41.7
QL04p082690 Quercus lobata HOM05D007798 ORTHO05D009882 4.4e-16 89.7 119 52.1
QL05p006610 Quercus lobata HOM05D007798 ORTHO05D009882 4.4e-16 89.7 119 42.9
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 5.7e-16 89.4 93 49.5
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 7.5e-16 89.0 94 46.8
QL05p075545 Quercus lobata HOM05D007798 ORTHO05D009882 9.7e-16 88.6 120 52.5
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 1.3e-15 88.2 95 50.5
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 2.8e-15 87.0 91 52.7
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 2.8e-15 87.0 92 54.3
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 3.7e-15 86.7 92 50.0
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 4.8e-15 86.3 94 48.9
QL02p083298 Quercus lobata HOM05D007798 ORTHO05D009882 6.3e-15 85.9 120 52.5
QL93p0053_0646 Quercus lobata HOM05D007798 ORTHO05D009882 8.2e-15 85.5 429 27.5
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 1.1e-14 85.1 95 48.4
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.1e-14 85.1 91 51.6
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 1.4e-14 84.7 94 48.9
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.8e-14 84.3 91 52.7
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 2.4e-14 84.0 94 45.7
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 3.1e-14 83.6 97 45.4
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 3.1e-14 83.6 93 53.8
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 3.1e-14 83.6 97 46.4
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.3e-14 82.8 93 46.2
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 7.0e-14 82.4 103 46.6
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 9.1e-14 82.0 94 46.8
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 9.1e-14 82.0 94 46.8
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.2e-13 81.6 93 50.5
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 1.6e-13 81.3 95 47.4
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 2.0e-13 80.9 100 44.0
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 2.7e-13 80.5 101 45.5
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 4.5e-13 79.7 151 38.4
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 5.9e-13 79.3 93 45.2
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 5.9e-13 79.3 95 48.4
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 7.7e-13 79.0 94 45.7
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 7.7e-13 79.0 95 48.4
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 7.7e-13 79.0 151 40.4
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 1.0e-12 78.6 95 45.3
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.7e-12 77.8 95 47.4
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 2.2e-12 77.4 95 47.4
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 2.2e-12 77.4 95 47.4
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 2.2e-12 77.4 95 47.4
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 2.9e-12 77.0 98 48.0
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 2.9e-12 77.0 92 50.0
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 2.9e-12 77.0 96 51.0
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 2.9e-12 77.0 94 45.7
CSS0004685 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 3.8e-12 76.6 120 37.5
CSS0008205 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 3.8e-12 76.6 120 37.5
CSS0033268 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 3.8e-12 76.6 120 37.5
CSS0034332 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 3.8e-12 76.6 120 37.5
CSS0047376 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 3.8e-12 76.6 120 37.5
QL05p078054 Quercus lobata HOM05D007798 ORTHO05D009882 3.8e-12 76.6 112 53.6
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 3.8e-12 76.6 102 43.1
CSS0029753 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 6.5e-12 75.9 120 37.5
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 6.5e-12 75.9 100 42.0
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.5e-11 74.7 96 44.8
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 1.5e-11 74.7 100 42.0
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 2.5e-11 73.9 98 46.9
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 2.5e-11 73.9 154 31.2
Rhsim01G0063300 Rhododendron simsii HOM05D007798 ORTHO05D009882 2.5e-11 73.9 118 37.3
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.5e-11 73.9 101 48.5
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 3.2e-11 73.6 95 46.3
CSS0021747 Camellia sinensis var. sinensis HOM05D007798 ORTHO05D009882 3.2e-11 73.6 120 36.7
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 3.2e-11 73.6 61 60.7
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.5e-11 72.8 92 45.7
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 5.5e-11 72.8 92 44.6
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 5.5e-11 72.8 92 44.6
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 9.4e-11 72.0 116 40.5
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.2e-10 71.6 157 36.9
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 2.7e-10 70.5 99 45.5
QL04p014844 Quercus lobata HOM05D007798 ORTHO05D009882 3.6e-10 70.1 73 50.7
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 4.7e-10 69.7 94 47.9
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 4.7e-10 69.7 97 41.2
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.3e-09 67.4 94 50.0
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 2.3e-09 67.4 149 29.5
QL11p017670 Quercus lobata HOM05D000126 ORTHO05D000085 2.3e-09 67.4 33 93.9
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 4.0e-09 66.6 155 36.1
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 5.2e-09 66.2 93 48.4
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 5.2e-09 66.2 93 49.5
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 6.8e-09 65.9 94 47.9
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.5e-08 64.7 77 42.9
Rhsim05G0032900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.0e-08 64.3 91 41.8
RhsimUnG0041700 Rhododendron simsii HOM05D007798 ORTHO05D009882 2.0e-08 64.3 91 41.8
Rhsim02G0147600 Rhododendron simsii HOM05D007798 ORTHO05D009882 4.4e-08 63.2 77 49.4
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 5.7e-08 62.8 95 45.3
Rhsim03G0043500 Rhododendron simsii HOM05D007798 ORTHO05D009882 7.5e-08 62.4 67 49.3
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.7e-07 61.2 93 46.2
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 2.2e-07 60.8 95 43.2
Rhsim05G0212100 Rhododendron simsii HOM05D007798 ORTHO05D009882 4.8e-07 59.7 73 41.1
Rhsim11G0003100 Rhododendron simsii HOM05D007798 ORTHO05D009882 4.8e-07 59.7 73 46.6
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 6.3e-07 59.3 105 39.0
Rhsim02G0017800 Rhododendron simsii HOM05D007798 ORTHO05D009882 6.3e-07 59.3 71 40.8
Rhsim06G0120600 Rhododendron simsii HOM05D000107 ORTHO05D000062 6.3e-07 59.3 67 47.8
RhsimUnG0025000 Rhododendron simsii HOM05D007798 ORTHO05D009882 6.3e-07 59.3 73 41.1
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 6.3e-07 59.3 113 36.3
Rhsim10G0117300 Rhododendron simsii HOM05D008652 ORTHO05D010516 3.1e-06 57.0 56 51.8
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 7.0e-06 55.8 99 37.4


User provided reference genes

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