Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 9.8e-136 486.9 259 100.0
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 7.2e-54 214.9 119 94.1
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 5.1e-52 208.8 119 92.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 5.7e-51 205.3 119 90.8
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.7e-50 203.8 119 90.8
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.6e-48 196.4 115 87.0
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 7.7e-48 194.9 118 86.4
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 1.0e-47 194.5 117 86.3
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.0e-47 194.5 118 85.6
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.7e-47 193.7 118 86.4
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 2.9e-47 193.0 118 85.6
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 6.5e-47 191.8 115 86.1
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 8.5e-47 191.4 118 85.6
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.1e-46 191.0 118 84.7
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 2.5e-46 189.9 119 84.9
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.5e-46 189.9 118 87.3
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.5e-46 189.9 118 87.3
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.5e-46 189.9 118 84.7
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 2.5e-46 189.9 118 84.7
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.2e-46 189.5 118 86.4
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 3.2e-46 189.5 110 88.2
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 4.2e-46 189.1 119 86.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 7.2e-46 188.3 111 87.4
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 9.4e-46 188.0 118 83.1
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 9.4e-46 188.0 119 82.4
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.6e-45 187.2 115 85.2
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.1e-45 186.8 118 83.1
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 2.1e-45 186.8 111 86.5
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 2.7e-45 186.4 119 84.0
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 4.7e-45 185.7 113 85.0
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 6.1e-45 185.3 117 82.1
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 6.1e-45 185.3 111 86.5
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 6.1e-45 185.3 118 85.6
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 7.9e-45 184.9 112 84.8
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.9e-45 184.9 118 85.6
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 7.9e-45 184.9 118 85.6
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 1.0e-44 184.5 118 83.9
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.4e-44 184.1 117 82.9
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-44 184.1 111 85.6
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.8e-44 183.7 113 84.1
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.8e-44 183.7 111 85.6
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 2.3e-44 183.3 110 87.3
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.3e-44 183.3 112 84.8
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.3e-44 183.3 112 84.8
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 2.3e-44 183.3 108 86.1
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 3.0e-44 183.0 110 86.4
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.0e-44 183.0 119 80.7
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 3.9e-44 182.6 118 80.5
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 3.9e-44 182.6 119 82.4
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 5.1e-44 182.2 119 82.4
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 6.7e-44 181.8 111 85.6
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 6.7e-44 181.8 115 83.5
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 8.8e-44 181.4 115 81.7
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 8.8e-44 181.4 111 84.7
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 8.8e-44 181.4 108 87.0
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 8.8e-44 181.4 111 84.7
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 8.8e-44 181.4 110 86.4
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.1e-43 181.0 111 83.8
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-43 180.6 118 80.5
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 2.0e-43 180.3 120 78.3
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.0e-43 180.3 110 85.5
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 2.6e-43 179.9 115 84.3
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 4.4e-43 179.1 110 85.5
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.4e-43 179.1 119 81.5
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 4.4e-43 179.1 119 79.0
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 9.7e-43 177.9 119 79.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 2.8e-42 176.4 117 78.6
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 2.8e-42 176.4 125 76.8
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.7e-42 176.0 117 82.1
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.7e-42 176.0 117 82.1
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.1e-41 174.5 105 85.7
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-41 174.1 105 84.8
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.8e-41 173.7 100 89.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 9.1e-41 171.4 115 79.1
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 9.1e-41 171.4 110 80.9
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-40 171.0 100 88.0
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.2e-40 171.0 119 79.8
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.5e-40 170.6 104 85.6
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 2.6e-40 169.9 99 87.9
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.6e-40 169.9 99 87.9
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.6e-40 169.9 99 87.9
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.6e-40 169.9 99 87.9
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 2.6e-40 169.9 119 78.2
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.6e-40 169.9 110 80.0
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 7.7e-40 168.3 109 80.7
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.0e-39 167.9 99 86.9
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.7e-39 167.2 119 73.1
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.2e-39 166.8 116 76.7
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 2.9e-39 166.4 110 75.5
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 3.8e-39 166.0 102 81.4
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 6.5e-39 165.2 113 75.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 1.1e-38 164.5 104 82.7
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.9e-38 163.7 104 80.8
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.9e-38 163.7 111 73.9
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 2.5e-38 163.3 110 77.3
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 2.5e-38 163.3 103 79.6
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.5e-38 163.3 116 73.3
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.2e-38 162.5 117 76.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 4.2e-38 162.5 117 76.1
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 7.2e-38 161.8 117 73.5
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.6e-37 160.6 117 72.6
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.6e-37 160.6 117 72.6
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 2.7e-37 159.8 116 73.3
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.7e-37 159.8 117 72.6
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 4.7e-37 159.1 111 73.9
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 4.7e-37 159.1 114 73.7
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 6.1e-37 158.7 118 75.4
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 6.1e-37 158.7 124 70.2
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.0e-36 157.9 115 73.0
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.0e-36 157.9 101 84.2
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.8e-36 157.1 110 77.3
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 3.0e-36 156.4 118 70.3
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 3.9e-36 156.0 98 79.6
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.7e-36 155.2 110 76.4
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.6e-35 153.3 118 68.6
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 7.4e-35 151.8 110 74.5
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 4.8e-34 149.1 108 68.5
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 3.1e-33 146.4 90 83.3
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.1e-33 146.4 85 87.1
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.6e-32 143.3 108 67.6
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 4.5e-32 142.5 101 74.3
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 4.2e-30 136.0 104 67.3
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.7e-29 133.3 86 81.4
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-28 130.2 87 78.2
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.7e-26 124.0 116 58.6
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 3.7e-26 122.9 77 81.8
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 3.7e-26 122.9 77 81.8
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 8.3e-26 121.7 109 56.9
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 5.5e-22 109.0 77 72.7
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 7.2e-22 108.6 67 80.6
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-21 107.5 69 78.3
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 4.7e-21 105.9 67 77.6
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 5.2e-20 102.4 69 75.4
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 5.2e-20 102.4 63 74.6
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.5e-19 100.9 130 54.6
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 4.4e-19 99.4 99 51.5
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-17 94.4 74 67.6
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-16 90.9 85 60.0
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.5e-16 89.4 73 65.8
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 5.9e-16 89.0 56 78.6
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 7.7e-16 88.6 56 80.4
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-15 85.5 68 69.1
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.1e-14 84.7 92 52.2
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.4e-12 77.8 113 41.6
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 2.3e-12 77.0 102 45.1
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 8.9e-12 75.1 82 53.7
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 2.0e-11 73.9 50 78.0
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 2.2e-10 70.5 115 39.1
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 8.3e-10 68.6 53 66.0
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.8e-09 67.4 48 79.2
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 2.4e-09 67.0 62 59.7
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 7.0e-09 65.5 90 45.6
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.6e-08 64.3 44 72.7
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 2.0e-08 63.9 113 35.4
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-07 60.5 75 48.0
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 8.6e-07 58.5 38 73.7
Sabra14G0106600 Salix brachista HOM05D001997 ORTHO05D005560 3.3e-06 56.6 48 68.8
arahy.Tifrunner.gnm1.ann1.PD5CRZ Arachis hypogaea HOM05D001997 ORTHO05D005560 9.5e-06 55.1 46 63.0
RcHm_v2.0_Chr7g0211671 Rosa chinensis HOM05D003587 ORTHO05D004139 9.5e-06 55.1 44 63.6


User provided reference genes

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