Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 1.5e-27 125.6 68 100.0
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 6.5e-23 110.2 68 86.8
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 1.6e-21 105.5 68 85.3
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 1.0e-20 102.8 68 85.3
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 9.7e-19 96.3 66 77.3
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 1.3e-18 95.9 69 76.8
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 2.2e-18 95.1 69 75.4
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 2.2e-18 95.1 69 75.4
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 2.8e-18 94.7 69 75.4
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 2.8e-18 94.7 66 78.8
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 2.8e-18 94.7 66 78.8
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 4.8e-18 94.0 66 74.2
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 1.1e-17 92.8 65 78.5
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 1.4e-17 92.4 68 76.5
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 3.1e-17 91.3 70 75.7
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 4.1e-17 90.9 69 72.5
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 4.1e-17 90.9 68 73.5
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 5.3e-17 90.5 70 78.6
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 7.0e-17 90.1 69 69.6
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 1.6e-16 89.0 68 69.1
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 1.6e-16 89.0 68 70.6
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 2.0e-16 88.6 69 69.6
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 2.7e-16 88.2 71 71.8
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 3.5e-16 87.8 68 69.1
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 4.5e-16 87.4 71 70.4
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 7.7e-16 86.7 68 70.6
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 7.7e-16 86.7 68 69.1
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 7.7e-16 86.7 69 69.6
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 1.7e-15 85.5 68 72.1
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 3.8e-15 84.3 68 73.5
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 3.8e-15 84.3 71 66.2
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 5.0e-15 84.0 68 70.6
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 6.5e-15 83.6 66 65.2
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 8.5e-15 83.2 66 71.2
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 8.5e-15 83.2 68 67.6
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 1.5e-14 82.4 69 65.2
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 1.5e-14 82.4 67 74.6
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 1.5e-14 82.4 63 76.2
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 2.5e-14 81.6 63 69.8
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 2.5e-14 81.6 63 69.8
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 2.5e-14 81.6 69 69.6
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 2.5e-14 81.6 65 66.2
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 3.2e-14 81.3 70 71.4
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 3.2e-14 81.3 65 73.8
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 4.2e-14 80.9 70 71.4
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 4.2e-14 80.9 65 64.6
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 5.5e-14 80.5 62 74.2
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 5.5e-14 80.5 61 77.0
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 9.4e-14 79.7 67 68.7
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 9.4e-14 79.7 61 70.5
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 1.2e-13 79.3 66 63.6
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 1.6e-13 79.0 70 70.0
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 1.6e-13 79.0 68 67.6
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 3.6e-13 77.8 69 68.1
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 3.6e-13 77.8 65 64.6
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 4.7e-13 77.4 69 65.2
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 8.0e-13 76.6 64 67.2
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 1.0e-12 76.3 63 66.7
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.4e-12 75.9 68 63.2
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.4e-12 75.9 68 63.2
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 1.4e-12 75.9 65 69.2
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 1.4e-12 75.9 68 63.2
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 2.3e-12 75.1 63 65.1
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 4.0e-12 74.3 67 61.2
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 4.0e-12 74.3 68 61.8
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 4.0e-12 74.3 68 61.8
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 6.8e-12 73.6 65 58.5
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 8.8e-12 73.2 65 58.5
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 4.4e-11 70.9 67 58.2
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 5.7e-11 70.5 67 58.2
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 5.7e-11 70.5 67 58.2
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 5.7e-11 70.5 67 58.2
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 5.7e-11 70.5 67 58.2
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 5.7e-11 70.5 67 58.2
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 5.7e-11 70.5 67 58.2
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 1.7e-10 68.9 67 56.7
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 2.2e-10 68.6 61 59.0
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 3.7e-10 67.8 68 60.3
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 7.0e-09 63.5 68 58.8
unitig_899.g15287 Utricularia gibba HOM05D007805 ORTHO05D009877 1.7e-07 58.9 65 49.2
EL10Ac6g15349 Beta vulgaris HOM05D007805 ORTHO05D009877 2.9e-07 58.2 53 56.6
Hund18262 Selenicereus undatus HOM05D007805 ORTHO05D009877 8.6e-07 56.6 42 66.7
Os04g0657900 Oryza sativa ssp. japonica HOM05D007805 ORTHO05D009877 1.1e-06 56.2 68 54.4
AagrBONN_evm.TU.Sc2ySwM_228.5835 Anthoceros agrestis HOM05D007805 ORTHO05D009877 5.5e-06 53.9 64 51.6


User provided reference genes

Program Settings