Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p046243 Quercus lobata HOM05D003594 ORTHO05D026973 5.6e-47 190.7 100 100.0
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.3e-40 168.7 95 92.6
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 9.0e-21 103.6 95 63.2
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 2.2e-19 99.0 100 61.0
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.6e-17 92.8 98 62.2
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 2.1e-17 92.4 95 61.1
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 5.1e-16 87.8 95 54.7
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 4.3e-15 84.7 95 56.8
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 2.8e-14 82.0 99 56.6
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 1.1e-13 80.1 95 50.5
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 4.0e-13 78.2 99 47.5
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 6.9e-13 77.4 95 54.7
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 4.5e-12 74.7 95 51.6
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 4.5e-12 74.7 99 48.5
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 4.5e-12 74.7 96 56.2
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 1.7e-11 72.8 95 48.4
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.2e-11 72.4 95 51.6
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 2.2e-11 72.4 99 47.5
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 6.5e-11 70.9 96 52.1
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 6.5e-11 70.9 96 52.1
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 6.5e-11 70.9 98 54.1
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 8.4e-11 70.5 95 49.5
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.1e-10 70.1 95 49.5
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 1.9e-10 69.3 95 51.6
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.9e-10 69.3 95 50.5
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.5e-10 68.9 99 44.4
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 4.2e-10 68.2 94 45.7
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 4.2e-10 68.2 99 43.4
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.5e-10 67.8 95 48.4
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 5.5e-10 67.8 99 45.5
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 1.2e-09 66.6 99 47.5
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 2.7e-09 65.5 95 47.4
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 4.6e-09 64.7 95 45.3
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 6.0e-09 64.3 101 49.5
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 6.0e-09 64.3 95 48.4
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 7.9e-09 63.9 99 40.4
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 1.3e-08 63.2 85 45.9
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.8e-08 62.8 93 46.2
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.3e-08 62.4 98 52.0
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 2.3e-08 62.4 95 41.1
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 3.0e-08 62.0 95 43.2
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 3.0e-08 62.0 95 46.3
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 3.0e-08 62.0 98 52.0
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 3.9e-08 61.6 95 44.2
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 8.7e-08 60.5 94 43.6
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 1.1e-07 60.1 95 44.2
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.1e-07 60.1 99 39.4
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 3.3e-07 58.5 95 45.3
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 4.3e-07 58.2 93 45.2
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 4.3e-07 58.2 98 51.0
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.3e-07 58.2 98 51.0
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 4.3e-07 58.2 99 40.4
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 5.7e-07 57.8 94 46.8
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.7e-07 57.8 95 42.1
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 5.7e-07 57.8 99 41.4
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 5.7e-07 57.8 95 47.4
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 7.4e-07 57.4 95 42.1
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 9.6e-07 57.0 95 48.4
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 1.3e-06 56.6 95 44.2
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.3e-06 56.6 95 48.4
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.7e-06 55.1 95 40.0
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.2e-06 54.3 95 42.1
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.2e-06 54.3 95 40.0


User provided reference genes

Program Settings