Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.9e-39 165.2 77 100.0
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 1.1e-18 96.3 54 81.5
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 1.9e-18 95.5 54 81.5
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 2.4e-13 78.6 54 61.1
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 6.9e-13 77.0 60 55.0
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 6.9e-13 77.0 60 55.0
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 6.9e-13 77.0 60 55.0
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 6.9e-13 77.0 60 55.0
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 1.5e-12 75.9 54 57.4
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 2.0e-12 75.5 56 57.1
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.0e-12 75.5 55 58.2
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 3.4e-12 74.7 66 45.5
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 3.4e-12 74.7 59 54.2
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 4.5e-12 74.3 59 50.8
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 4.5e-12 74.3 59 57.6
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 7.7e-12 73.6 54 53.7
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 1.0e-11 73.2 61 52.5
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 1.7e-11 72.4 55 56.4
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 3.8e-11 71.2 61 50.8
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 3.8e-11 71.2 63 52.4
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 5.0e-11 70.9 56 55.4
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 5.0e-11 70.9 56 55.4
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 5.0e-11 70.9 56 55.4
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 5.0e-11 70.9 54 57.4
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 8.5e-11 70.1 66 47.0
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.1e-10 69.7 45 62.2
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.4e-10 69.3 54 53.7
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.4e-10 69.3 56 50.0
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.9e-10 68.9 53 56.6
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 2.5e-10 68.6 54 55.6
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.5e-10 68.6 53 54.7
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 3.2e-10 68.2 56 50.0
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 3.2e-10 68.2 59 47.5
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 3.2e-10 68.2 50 62.0
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 4.2e-10 67.8 57 50.9
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 4.2e-10 67.8 59 49.2
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 5.5e-10 67.4 54 53.7
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 5.5e-10 67.4 54 55.6
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 5.5e-10 67.4 51 54.9
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 5.5e-10 67.4 56 53.6
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 5.5e-10 67.4 52 57.7
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 7.2e-10 67.0 56 51.8
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 7.2e-10 67.0 54 53.7
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 9.4e-10 66.6 56 51.8
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 9.4e-10 66.6 54 53.7
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 9.4e-10 66.6 54 53.7
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.2e-09 66.2 53 49.1
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 1.2e-09 66.2 52 53.8
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 1.2e-09 66.2 51 54.9
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 1.2e-09 66.2 51 54.9
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 1.6e-09 65.9 57 50.9
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.6e-09 65.9 53 56.6
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.1e-09 65.5 57 49.1
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 2.1e-09 65.5 48 54.2
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 2.7e-09 65.1 41 63.4
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 2.7e-09 65.1 50 52.0
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 2.7e-09 65.1 52 53.8
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 3.6e-09 64.7 55 54.5
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 3.6e-09 64.7 52 55.8
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 4.6e-09 64.3 40 65.0
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 6.1e-09 63.9 54 50.0
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 6.1e-09 63.9 45 51.1
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 6.1e-09 63.9 45 53.3
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.9e-09 63.5 54 50.0
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 7.9e-09 63.5 39 61.5
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.0e-08 63.2 39 59.0
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.4e-08 62.8 57 49.1
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 1.4e-08 62.8 51 51.0
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.4e-08 62.8 50 46.0
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.4e-08 62.8 55 41.8
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.4e-08 62.8 41 56.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.4e-08 62.8 45 51.1
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.4e-08 62.8 38 65.8
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 1.4e-08 62.8 42 59.5
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 1.8e-08 62.4 38 57.9
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.8e-08 62.4 53 43.4
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.8e-08 62.4 59 44.1
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.3e-08 62.0 38 65.8
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 2.3e-08 62.0 65 41.5
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 2.3e-08 62.0 47 48.9
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 3.0e-08 61.6 51 45.1
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.0e-08 61.6 55 52.7
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 3.9e-08 61.2 53 43.4
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 3.9e-08 61.2 44 52.3
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 3.9e-08 61.2 54 51.9
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 3.9e-08 61.2 45 48.9
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 5.1e-08 60.8 53 43.4
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 5.1e-08 60.8 54 51.9
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 6.7e-08 60.5 50 44.0
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 6.7e-08 60.5 54 48.1
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 8.8e-08 60.1 54 46.3
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 8.8e-08 60.1 50 42.0
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 8.8e-08 60.1 41 51.2
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 8.8e-08 60.1 43 51.2
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 1.1e-07 59.7 56 50.0
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.1e-07 59.7 57 42.1
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.1e-07 59.7 50 46.0
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.5e-07 59.3 52 46.2
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.5e-07 59.3 38 57.9
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.5e-07 59.3 54 48.1
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 2.0e-07 58.9 54 48.1
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.6e-07 58.5 40 52.5
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 2.6e-07 58.5 42 59.5
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 3.3e-07 58.2 46 47.8
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 4.4e-07 57.8 56 46.4
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 4.4e-07 57.8 54 46.3
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 4.4e-07 57.8 54 44.4
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 5.7e-07 57.4 54 42.6
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 7.4e-07 57.0 37 54.1
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 7.4e-07 57.0 43 44.2
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 7.4e-07 57.0 47 48.9
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 9.7e-07 56.6 36 61.1
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.3e-06 56.2 43 41.9
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 1.3e-06 56.2 60 40.0
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.7e-06 55.8 37 51.4
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.7e-06 55.8 41 48.8
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 2.8e-06 55.1 41 46.3
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 3.7e-06 54.7 45 42.2
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 4.8e-06 54.3 44 47.7
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 4.8e-06 54.3 46 54.3
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 8.2e-06 53.5 54 44.4
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 8.2e-06 53.5 54 44.4
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 8.2e-06 53.5 39 51.3


User provided reference genes

Program Settings