Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p038735 Quercus lobata HOM05D005329 ORTHO05D006858 2.3e-257 891.7 462 100.0
Cfa011170 Carpinus fangiana HOM05D005329 ORTHO05D006858 5.5e-174 614.8 465 72.3
CiPaw.14G025800 Carya illinoinensis HOM05D005329 ORTHO05D006858 4.9e-170 601.7 466 70.6
MD07G1115700 Malus domestica HOM05D005329 ORTHO05D006858 1.1e-166 590.5 464 68.1
Atru.chr5.253 Acer truncatum HOM05D005329 ORTHO05D006858 4.0e-164 582.0 460 68.0
Prupe.2G138300 Prunus persica HOM05D005329 ORTHO05D006858 8.9e-164 580.9 466 67.4
TWI23G1139 Tripterygium wilfordii HOM05D005329 ORTHO05D006858 1.7e-162 576.6 455 68.1
Gohir.D07G152900 Gossypium hirsutum HOM05D005329 ORTHO05D006858 3.7e-162 575.5 460 67.2
RcHm_v2.0_Chr1g0349131 Rosa chinensis HOM05D005329 ORTHO05D006858 4.9e-162 575.1 465 66.9
Gorai.001G175000 Gossypium raimondii HOM05D005329 ORTHO05D006858 1.1e-161 573.9 460 67.0
Manes.01G269000 Manihot esculenta HOM05D005329 ORTHO05D006858 2.7e-160 569.3 456 66.7
FAN10G0345 Fragaria x ananassa HOM05D005329 ORTHO05D006858 1.9e-158 563.1 466 66.5
Duzib133G0265 Durio zibethinus HOM05D005329 ORTHO05D006858 3.3e-158 562.4 459 66.7
FAN10G0671 Fragaria x ananassa HOM05D005329 ORTHO05D006858 3.3e-158 562.4 466 66.5
COL.COLO4_12491 Corchorus olitorius HOM05D005329 ORTHO05D006858 1.2e-157 560.5 459 66.2
FAN03G0115 Fragaria x ananassa HOM05D005329 ORTHO05D006858 1.2e-157 560.5 466 66.1
GSVIVG01027681001 Vitis vinifera HOM05D005329 ORTHO05D006858 1.6e-157 560.1 459 66.7
Thecc.01G382500 Theobroma cacao HOM05D005329 ORTHO05D006858 4.7e-157 558.5 452 66.6
FAN06G1173 Fragaria x ananassa HOM05D005329 ORTHO05D006858 1.8e-156 556.6 468 66.0
FAN06G0681 Fragaria x ananassa HOM05D005329 ORTHO05D006858 5.2e-156 555.1 469 65.7
Haze_02679 Corylus avellana HOM05D005329 ORTHO05D006858 2.2e-154 549.7 608 55.4
CANSAT56G1088 Cannabis sativa HOM05D005329 ORTHO05D006858 8.3e-154 547.7 454 64.8
Eucgr.E01511 Eucalyptus grandis HOM05D005329 ORTHO05D006858 1.1e-153 547.4 449 65.5
TAR375G0089 Trochodendron aralioides HOM05D005329 ORTHO05D006858 1.1e-153 547.4 463 65.0
Ciclev10020384m.g Citrus clementina HOM05D005329 ORTHO05D006858 4.1e-153 545.4 451 66.1
CANSAT56G2474 Cannabis sativa HOM05D005329 ORTHO05D006858 9.2e-153 544.3 453 64.5
Potri.014G060100 Populus trichocarpa HOM05D005329 ORTHO05D006858 6.0e-152 541.6 463 62.9
Gohir.A07G146900 Gossypium hirsutum HOM05D005329 ORTHO05D006858 3.9e-151 538.9 444 65.3
Nn6g33989 Nelumbo nucifera HOM05D005329 ORTHO05D006858 8.6e-151 537.7 461 64.6
CAN.G1469.16 Capsicum annuum HOM05D005329 ORTHO05D006858 9.5e-150 534.3 463 62.2
Nitab4.5_0012722g0010 Nicotiana tabacum HOM05D005329 ORTHO05D006858 8.1e-149 531.2 455 62.6
CSS0046286 Camellia sinensis var. sinensis HOM05D005329 ORTHO05D006858 4.0e-148 528.9 464 63.8
MELO3C021145.2 Cucumis melo HOM05D005329 ORTHO05D006858 6.8e-148 528.1 453 60.7
CsaV3_6G009150 Cucumis sativus L. HOM05D005329 ORTHO05D006858 8.9e-148 527.7 450 61.1
Nitab4.5_0000859g0250 Nicotiana tabacum HOM05D005329 ORTHO05D006858 2.0e-147 526.6 455 62.6
Solyc01g090940.3 Solanum lycopersicum HOM05D005329 ORTHO05D006858 3.4e-147 525.8 458 62.2
Sopen01g036670 Solanum pennellii HOM05D005329 ORTHO05D006858 1.3e-146 523.9 458 62.0
THA.LOC104817220 Tarenaya hassleriana HOM05D005329 ORTHO05D006858 8.3e-146 521.2 450 62.4
Dinv44120 Davidia involucrata HOM05D005329 ORTHO05D006858 2.4e-145 519.6 470 62.3
FAN01G1917 Fragaria x ananassa HOM05D005329 ORTHO05D006858 2.7e-144 516.2 464 62.7
Peaxi162Scf00803g00018 Petunia axillaris HOM05D005329 ORTHO05D006858 1.1e-142 510.8 458 61.8
Sp5g02620 Schrenkiella parvula HOM05D005329 ORTHO05D006858 3.3e-142 509.2 445 61.3
Thhalv10001472m.g Eutrema salsugineum HOM05D005329 ORTHO05D006858 7.3e-142 508.1 462 60.8
Hma1.2p1_0072F.1_g038340 Hydrangea macrophylla HOM05D005329 ORTHO05D006858 9.5e-142 507.7 378 70.4
Rhsim07G0031000 Rhododendron simsii HOM05D005329 ORTHO05D006858 1.6e-141 506.9 449 61.9
AL4G44260 Arabidopsis lyrata HOM05D005329 ORTHO05D006858 1.1e-140 504.2 436 62.2
PGR142G4306 Punica granatum HOM05D005329 ORTHO05D006858 1.1e-140 504.2 450 62.7
Sc24g0004030 Simmondsia chinensis HOM05D005329 ORTHO05D006858 1.1e-140 504.2 449 60.8
AT2G45150 Arabidopsis thaliana HOM05D005329 ORTHO05D006858 1.8e-140 503.4 456 61.2
ClCG06G003040 Citrullus lanatus HOM05D005329 ORTHO05D006858 1.8e-140 503.4 517 53.6
Sp4g27210 Schrenkiella parvula HOM05D005329 ORTHO05D006858 1.5e-139 500.4 460 59.8
SGA_v2.0_scaffold153G36970 Striga asiatica HOM05D005329 ORTHO05D006858 1.5e-139 500.4 455 61.1
Cc02_g24400 Coffea canephora HOM05D005329 ORTHO05D006858 9.9e-139 497.7 427 61.8
PGSC0003DMG400026014 Solanum tuberosum HOM05D005329 ORTHO05D006858 9.9e-139 497.7 399 65.2
Sabra14G0044000 Salix brachista HOM05D005329 ORTHO05D006858 2.2e-138 496.5 547 53.4
Carub.0005s2735 Capsella rubella HOM05D005329 ORTHO05D006858 2.9e-138 496.1 443 59.8
MSTRG.20729 Avicennia marina HOM05D005329 ORTHO05D006858 8.4e-138 494.6 396 66.2
SalBow5G1302 Salvia bowleyana HOM05D005329 ORTHO05D006858 8.4e-138 494.6 459 59.7
AT3G60620 Arabidopsis thaliana HOM05D005329 ORTHO05D006858 1.4e-137 493.8 447 60.4
arahy.Tifrunner.gnm1.ann1.UJ6N0S Arachis hypogaea HOM05D005329 ORTHO05D006858 1.4e-137 493.8 450 60.4
vmacro13440 Vaccinium macrocarpon HOM05D005329 ORTHO05D006858 1.9e-137 493.4 386 67.1
Phvul.006G076100 Phaseolus vulgaris HOM05D005329 ORTHO05D006858 3.2e-137 492.7 443 61.4
Carub.0004s2776 Capsella rubella HOM05D005329 ORTHO05D006858 4.1e-137 492.3 446 60.1
Thhalv10006014m.g Eutrema salsugineum HOM05D005329 ORTHO05D006858 4.1e-137 492.3 446 59.4
TPR.G24981 Trifolium pratense HOM05D005329 ORTHO05D006858 5.4e-137 491.9 394 64.7
Migut.B01596 Erythranthe guttata HOM05D005329 ORTHO05D006858 2.1e-136 490.0 456 60.7
Ca_15027_v3 Cicer arietinum L. HOM05D005329 ORTHO05D006858 2.7e-136 489.6 394 65.2
VMungo0540G2212 Vigna mungo HOM05D005329 ORTHO05D006858 6.0e-136 488.4 414 63.3
Lj6g0011922 Lotus japonicus HOM05D005329 ORTHO05D006858 7.8e-136 488.0 394 65.0
Sed0016036 Sechium edule HOM05D005329 ORTHO05D006858 1.0e-135 487.6 438 58.7
BcaB01g03288 Brassica carinata HOM05D005329 ORTHO05D006858 8.6e-135 484.6 460 57.2
arahy.Tifrunner.gnm1.ann1.6F7D9A Arachis hypogaea HOM05D005329 ORTHO05D006858 1.5e-134 483.8 464 58.8
EL10Ac4g07683 Beta vulgaris HOM05D005329 ORTHO05D006858 1.9e-134 483.4 464 57.8
Aqoxy7G00752 Aquilegia oxysepala HOM05D005329 ORTHO05D006858 4.3e-134 482.3 465 58.9
Medtr3g466380 Medicago truncatula HOM05D005329 ORTHO05D006858 4.3e-134 482.3 364 68.1
HanXRQChr06g0169081 Helianthus annuus HOM05D005329 ORTHO05D006858 1.2e-133 480.7 449 58.6
Glyma.11G161400 Glycine max HOM05D005329 ORTHO05D006858 3.6e-133 479.2 449 59.7
Lalb_Chr20g0117361 Lupinus albus HOM05D005329 ORTHO05D006858 4.7e-133 478.8 364 67.9
BcaC01g05155 Brassica carinata HOM05D005329 ORTHO05D006858 6.2e-133 478.4 460 57.4
HanXRQChr04g0123141 Helianthus annuus HOM05D005329 ORTHO05D006858 8.1e-133 478.0 390 66.2
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.1e-132 477.6 390 65.1
AUR62034758 Chenopodium quinoa HOM05D005329 ORTHO05D006858 1.4e-132 477.2 412 61.9
Ah.04g166190 Amaranthus hybridus HOM05D005329 ORTHO05D006858 4.0e-132 475.7 397 62.2
Lsat_1_v5_gn_7_9240 Lactuca sativa HOM05D005329 ORTHO05D006858 4.0e-132 475.7 454 59.5
Aa31LG10G14910 Aethionema arabicum HOM05D005329 ORTHO05D006858 6.9e-132 474.9 459 59.0
Glyma.18G055100 Glycine max HOM05D005329 ORTHO05D006858 1.5e-131 473.8 451 59.9
unitig_8.g3829 Utricularia gibba HOM05D005329 ORTHO05D006858 4.9e-130 468.8 406 61.3
Psat5g150560 Pisum sativum HOM05D005329 ORTHO05D006858 1.1e-129 467.6 394 61.7
BraA03t11707Z Brassica rapa HOM05D005329 ORTHO05D006858 1.9e-129 466.8 460 56.5
A03p25050 Brassica napus HOM05D005329 ORTHO05D006858 3.2e-129 466.1 460 56.5
PSO210G1941 Papaver somniferum HOM05D005329 ORTHO05D006858 3.2e-129 466.1 471 54.6
Duzib138G0318 Durio zibethinus HOM05D005329 ORTHO05D006858 4.2e-129 465.7 335 72.2
A09p52830 Brassica napus HOM05D005329 ORTHO05D006858 1.6e-128 463.8 444 57.4
BraA09t40715Z Brassica rapa HOM05D005329 ORTHO05D006858 7.8e-128 461.5 448 57.1
C08p35570 Brassica napus HOM05D005329 ORTHO05D006858 1.7e-127 460.3 449 57.0
BolC8t51147H Brassica oleracea HOM05D005329 ORTHO05D006858 1.7e-127 460.3 454 56.4
MD02G1210300 Malus domestica HOM05D005329 ORTHO05D006858 1.1e-126 457.6 382 66.0
C03p29890 Brassica napus HOM05D005329 ORTHO05D006858 2.5e-126 456.4 460 55.4
BolC3t15336H Brassica oleracea HOM05D005329 ORTHO05D006858 2.5e-126 456.4 460 55.4
ECA236G1715 Erigeron canadensis HOM05D005329 ORTHO05D006858 4.8e-125 452.2 307 74.6
CSS0025552 Camellia sinensis var. sinensis HOM05D005329 ORTHO05D006858 5.3e-124 448.7 464 57.1
ATR0807G181 Amborella trichopoda HOM05D005329 ORTHO05D006858 1.2e-123 447.6 369 63.4
Oeu005823.1 Olea europaea HOM05D005329 ORTHO05D006858 6.4e-122 441.8 471 55.0
Dinv43674 Davidia involucrata HOM05D005329 ORTHO05D006858 8.4e-122 441.4 346 67.3
SEGI_35106 Sequoiadendron giganteum HOM05D005329 ORTHO05D006858 8.7e-119 431.4 417 57.1
Aa31LG1G26700 Aethionema arabicum HOM05D005329 ORTHO05D006858 9.6e-118 427.9 452 55.3
BcaC07g40582 Brassica carinata HOM05D005329 ORTHO05D006858 4.0e-116 422.5 443 54.4
DCAR_015887 Daucus carota HOM05D005329 ORTHO05D006858 7.6e-115 418.3 464 53.7
Actinidia12186 Actinidia chinensis HOM05D005329 ORTHO05D006858 1.3e-114 417.5 357 63.3
Lj7A535G33 Lonicera japonica HOM05D005329 ORTHO05D006858 2.9e-114 416.4 410 56.3
Actinidia22816 Actinidia chinensis HOM05D005329 ORTHO05D006858 1.1e-113 414.5 342 63.7
Zm00001eb230950 Zea mays HOM05D005329 ORTHO05D006858 1.2e-112 411.0 361 59.6
Zm00001eb208740 Zea mays HOM05D005329 ORTHO05D006858 2.7e-112 409.8 352 60.8
FvH4_7g11110 Fragaria vesca HOM05D005329 ORTHO05D006858 1.3e-111 407.5 295 71.5
AagrBONN_evm.TU.Sc2ySwM_228.5763 Anthoceros agrestis HOM05D005329 ORTHO05D006858 1.8e-103 380.6 357 57.1
Mapoly0037s0028 Marchantia polymorpha HOM05D005329 ORTHO05D006858 1.6e-101 374.0 391 52.4
CDE04G3112 Ceratophyllum demersum HOM05D005329 ORTHO05D006858 2.0e-99 367.1 395 53.4
unitig_31.g34043 Utricularia gibba HOM05D005329 ORTHO05D006858 2.0e-99 367.1 319 61.4
Hund22462 Selenicereus undatus HOM05D005329 ORTHO05D006858 7.6e-99 365.2 492 47.2
Pp3c5_19250 Physcomitrium patens HOM05D005329 ORTHO05D006858 1.3e-98 364.4 401 49.6
SMO118G0360 Selaginella moellendorffii HOM05D005329 ORTHO05D006858 6.5e-98 362.1 363 52.6
Pp3c6_11200 Physcomitrium patens HOM05D005329 ORTHO05D006858 7.2e-97 358.6 388 51.5
Actinidia22760 Actinidia chinensis HOM05D005329 ORTHO05D006858 4.5e-91 339.3 217 77.4
HPP92_022438 Vanilla planifolia HOM05D005329 ORTHO05D006858 3.8e-90 336.3 361 51.0
CBR_g46453 Chara braunii HOM05D005329 ORTHO05D006858 1.2e-88 331.3 351 47.9
CBR_g3184 Chara braunii HOM05D005329 ORTHO05D006858 9.7e-86 321.6 355 48.2
CARHR171010 Cardamine hirsuta HOM05D005329 ORTHO05D006858 1.6e-72 277.7 245 61.2
MBI04_g41908_MAGBIO Magnolia biondii HOM05D005329 ORTHO05D006858 2.4e-68 263.8 251 58.6
AUR62044468 Chenopodium quinoa HOM05D005329 ORTHO05D006858 9.8e-62 241.9 191 64.9
Cre12.g489050 Chlamydomonas reinhardtii HOM05D005329 ORTHO05D006858 2.9e-58 230.3 359 41.5
MBI04_g41909_MAGBIO Magnolia biondii HOM05D005329 ORTHO05D006858 4.0e-55 219.9 229 53.3
Cpa.g.c30654 Carica papaya HOM05D005329 ORTHO05D006858 2.4e-52 210.7 136 75.7
PRCOL_00006057 Prasinoderma coloniale HOM05D005329 ORTHO05D006858 1.1e-44 185.3 353 37.4
MCO03G003 Micromonas commoda HOM05D005329 ORTHO05D006858 1.5e-41 174.9 359 31.8
ECA027G0001 Erigeron canadensis HOM05D000446 ORTHO05D000321 2.8e-40 170.6 188 56.4
Cpa.g.sc49.156 Carica papaya HOM05D005329 ORTHO05D006858 2.9e-37 160.6 244 44.7
Actinidia31424 Actinidia chinensis HOM05D005329 ORTHO05D030836 1.7e-18 98.2 110 53.6
Actinidia33267 Actinidia chinensis HOM05D005329 ORTHO05D006858 6.6e-10 69.7 59 61.0
Actinidia31430 Actinidia chinensis HOM05D000467 ORTHO05D030836 3.6e-08 63.9 67 55.2
AL1G56100 Arabidopsis lyrata HOM05D000440 ORTHO05D000295 3.1e-07 60.8 113 37.2
Rhsim05G0129700 Rhododendron simsii HOM05D003425 ORTHO05D003897 9.0e-07 59.3 41 65.9
Thhalv10026913m.g Eutrema salsugineum HOM05D002455 ORTHO05D002816 2.6e-06 57.8 124 35.5
Gohir.A05G174300 Gossypium hirsutum HOM05D002455 ORTHO05D002816 4.5e-06 57.0 201 29.4


User provided reference genes

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