Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 8.1e-94 347.1 174 100.0
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.1e-73 279.3 174 79.9
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.1e-73 279.3 174 76.4
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 2.7e-73 278.9 175 81.7
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.3e-72 276.6 177 78.0
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.8e-72 276.2 174 81.0
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 6.7e-72 274.2 174 77.0
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 8.7e-72 273.9 174 79.3
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 3.3e-71 271.9 174 79.9
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 3.3e-71 271.9 174 77.6
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.6e-70 269.6 175 77.1
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.2e-70 269.2 163 81.0
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 2.8e-70 268.9 174 75.9
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 6.3e-70 267.7 180 73.9
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 8.2e-70 267.3 174 77.6
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.1e-69 266.9 177 76.3
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.8e-69 266.2 174 75.9
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 3.1e-69 265.4 174 77.0
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 3.1e-69 265.4 174 77.0
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 4.1e-69 265.0 163 80.4
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 9.0e-69 263.8 174 75.9
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.2e-68 263.5 163 79.1
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.2e-68 263.5 175 75.4
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.2e-68 263.5 170 78.2
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 1.2e-68 263.5 173 76.9
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 1.5e-68 263.1 174 75.9
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 2.0e-68 262.7 174 74.7
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.0e-68 262.7 174 76.4
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 3.4e-68 261.9 174 75.3
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 3.4e-68 261.9 163 79.1
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 3.4e-68 261.9 174 74.7
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 4.5e-68 261.5 173 75.1
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 4.5e-68 261.5 175 76.0
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 4.5e-68 261.5 173 76.3
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.9e-68 261.2 175 75.4
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.9e-68 261.2 175 75.4
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.9e-68 261.2 175 75.4
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.6e-68 260.8 163 79.1
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 7.6e-68 260.8 174 74.1
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.3e-67 260.0 174 73.6
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.3e-67 260.0 185 71.9
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.7e-67 259.6 174 74.1
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 2.2e-67 259.2 173 78.0
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.8e-67 258.5 163 78.5
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.8e-67 258.5 175 74.9
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 6.5e-67 257.7 174 74.1
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 8.5e-67 257.3 174 71.8
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 8.5e-67 257.3 174 72.4
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 8.5e-67 257.3 174 72.4
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.4e-66 256.5 172 73.8
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.9e-66 256.1 174 71.8
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.9e-66 256.1 177 72.9
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 2.5e-66 255.8 174 71.8
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.5e-66 255.8 198 69.2
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 3.2e-66 255.4 177 74.6
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.2e-66 255.4 174 71.3
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 4.2e-66 255.0 174 73.6
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 4.2e-66 255.0 177 72.3
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 5.5e-66 254.6 174 71.3
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 5.5e-66 254.6 174 71.3
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 5.5e-66 254.6 175 72.6
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 7.2e-66 254.2 174 71.8
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 9.3e-66 253.8 174 71.8
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 9.3e-66 253.8 178 73.0
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.2e-65 253.4 172 72.1
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.2e-65 253.4 174 73.0
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.6e-65 253.1 174 71.8
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 2.1e-65 252.7 181 72.4
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 2.7e-65 252.3 174 73.0
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 3.6e-65 251.9 173 72.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 4.6e-65 251.5 174 70.7
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.6e-65 251.5 174 70.1
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.9e-65 250.8 174 71.8
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 7.9e-65 250.8 173 72.8
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 7.9e-65 250.8 175 72.0
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.0e-64 250.4 177 74.0
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.3e-64 250.0 174 70.7
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.3e-64 250.0 163 77.3
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.8e-64 249.6 174 71.8
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.8e-64 249.6 174 71.8
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.8e-64 249.6 174 69.5
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 1.8e-64 249.6 172 73.8
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 2.3e-64 249.2 171 73.1
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.7e-64 247.7 203 65.0
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.7e-64 247.7 203 65.0
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.7e-64 247.7 203 65.0
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 8.7e-64 247.3 176 71.0
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.1e-63 246.9 174 74.1
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.5e-63 246.5 174 70.1
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.5e-63 246.5 175 70.9
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.9e-63 246.1 174 71.3
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.3e-63 245.4 174 69.5
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 7.4e-63 244.2 172 72.1
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.3e-62 243.4 174 67.2
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.7e-62 243.0 173 69.9
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 2.2e-62 242.7 174 66.7
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 4.8e-62 241.5 175 69.7
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 3.1e-61 238.8 161 73.3
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.5e-60 236.5 167 70.7
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.5e-60 236.5 208 60.1
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 2.6e-60 235.7 167 70.7
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 2.6e-60 235.7 167 70.7
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.5e-60 235.0 221 60.2
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.5e-60 235.0 171 67.8
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.9e-58 229.6 169 65.7
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 4.7e-57 224.9 169 65.7
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 6.1e-57 224.6 146 76.0
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.1e-55 220.3 194 64.9
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 2.6e-55 219.2 229 52.4
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 7.4e-55 217.6 165 66.1
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.8e-54 215.7 138 76.1
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.8e-54 215.7 212 57.5
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 3.7e-54 215.3 266 49.2
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 6.1e-49 198.0 185 60.0
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 8.8e-48 194.1 119 78.2
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.1e-47 193.7 175 59.4
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.4e-45 186.8 112 77.7
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.1e-45 185.7 171 58.5
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 5.0e-43 178.3 174 58.6
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 6.3e-38 161.4 113 67.3
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.2e-36 157.1 121 67.8
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 5.9e-36 154.8 115 67.0
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 2.2e-35 152.9 113 69.0
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 8.5e-35 151.0 111 68.5
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 8.5e-35 151.0 139 50.4
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.5e-34 149.4 111 66.7
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.1e-33 146.4 138 48.6
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 3.6e-33 145.6 100 70.0
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.2e-32 141.7 120 64.2
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 8.8e-32 141.0 105 68.6
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.1e-29 132.5 108 60.2
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 5.4e-29 131.7 102 64.7
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 9.5e-26 120.9 73 76.7
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 9.5e-26 120.9 73 76.7
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 5.2e-24 115.2 112 43.8
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 1.8e-21 106.7 62 83.9
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.1e-21 105.9 85 69.4
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 7.0e-21 104.8 104 44.2
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.0e-20 103.2 74 71.6
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 2.7e-20 102.8 110 40.9
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 4.5e-20 102.1 63 77.8
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.3e-19 99.8 103 51.5
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 3.8e-19 99.0 64 71.9
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 7.3e-18 94.7 99 47.5
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.5e-18 94.4 93 51.6
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 6.1e-17 91.7 62 71.0
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 5.8e-15 85.1 106 39.6
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 5.8e-15 85.1 136 36.8
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 7.0e-13 78.2 50 74.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.6e-12 77.0 104 48.1
QL04p024921 Quercus lobata HOM05D004886 ORTHO05D005868 1.3e-06 57.4 28 100.0


User provided reference genes

Program Settings