Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 2.0e-58 228.8 107 100.0
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 2.1e-31 139.0 75 92.0
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 5.1e-30 134.4 75 88.0
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 6.6e-30 134.0 75 86.7
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 8.7e-30 133.7 75 88.0
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.1e-29 133.3 75 86.7
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.5e-29 132.9 75 86.7
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.5e-29 132.9 75 86.7
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 1.5e-29 132.9 75 86.7
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.5e-29 132.9 75 86.7
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.5e-29 132.9 75 86.7
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 1.9e-29 132.5 75 88.0
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 1.9e-29 132.5 75 85.3
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 2.5e-29 132.1 75 88.0
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 3.3e-29 131.7 75 86.7
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 3.3e-29 131.7 75 86.7
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 5.6e-29 131.0 75 85.3
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 5.6e-29 131.0 75 86.7
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 5.6e-29 131.0 75 85.3
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 5.6e-29 131.0 91 70.3
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.6e-29 131.0 75 85.3
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 5.6e-29 131.0 75 85.3
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 7.3e-29 130.6 75 85.3
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 7.3e-29 130.6 75 85.3
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 7.3e-29 130.6 75 85.3
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 9.6e-29 130.2 75 84.0
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 9.6e-29 130.2 75 85.3
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 1.3e-28 129.8 75 85.3
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 1.6e-28 129.4 75 85.3
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 1.6e-28 129.4 68 91.2
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.6e-28 129.4 68 91.2
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 2.1e-28 129.0 75 82.7
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 2.1e-28 129.0 75 82.7
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 2.1e-28 129.0 75 82.7
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 2.1e-28 129.0 75 84.0
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 2.1e-28 129.0 75 82.7
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 2.1e-28 129.0 75 82.7
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 2.8e-28 128.6 75 84.0
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 2.8e-28 128.6 66 93.9
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 2.8e-28 128.6 75 82.7
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 2.8e-28 128.6 75 82.7
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 2.8e-28 128.6 67 91.0
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 3.6e-28 128.3 75 85.3
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 4.8e-28 127.9 68 89.7
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 4.8e-28 127.9 67 92.5
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 4.8e-28 127.9 67 92.5
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 6.2e-28 127.5 75 84.0
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 6.2e-28 127.5 75 82.7
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 6.2e-28 127.5 67 91.0
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 8.1e-28 127.1 75 82.7
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 8.1e-28 127.1 75 82.7
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 1.1e-27 126.7 67 89.6
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 1.1e-27 126.7 75 82.7
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 1.4e-27 126.3 75 84.0
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 1.4e-27 126.3 75 81.3
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 1.4e-27 126.3 66 90.9
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.4e-27 126.3 73 83.6
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 1.4e-27 126.3 75 82.7
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 1.4e-27 126.3 67 91.0
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 2.4e-27 125.6 67 89.6
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 2.4e-27 125.6 75 81.3
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 2.4e-27 125.6 75 81.3
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 4.0e-27 124.8 73 83.6
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 4.0e-27 124.8 75 81.3
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 5.3e-27 124.4 75 80.0
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 6.9e-27 124.0 67 88.1
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 6.9e-27 124.0 75 80.0
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 6.9e-27 124.0 75 80.0
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 6.9e-27 124.0 75 80.0
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 6.9e-27 124.0 75 80.0
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 6.9e-27 124.0 75 80.0
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 6.9e-27 124.0 75 80.0
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 6.9e-27 124.0 75 81.3
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 6.9e-27 124.0 73 82.2
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 9.0e-27 123.6 75 80.0
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 9.0e-27 123.6 75 81.3
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 9.0e-27 123.6 75 81.3
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 1.2e-26 123.2 75 81.3
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 1.2e-26 123.2 75 81.3
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 1.2e-26 123.2 75 81.3
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 1.5e-26 122.9 75 80.0
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 2.0e-26 122.5 75 78.7
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 2.0e-26 122.5 75 78.7
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 2.6e-26 122.1 75 78.7
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.5e-26 121.3 66 87.9
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 5.8e-26 120.9 75 78.7
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 7.6e-26 120.6 67 85.1
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 7.6e-26 120.6 93 67.7
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 1.3e-25 119.8 75 77.3
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.7e-25 119.4 75 80.0
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 1.7e-25 119.4 75 80.0
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 1.7e-25 119.4 75 77.3
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 2.2e-25 119.0 75 81.3
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 1.1e-24 116.7 66 84.8
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 1.9e-24 115.9 75 74.7
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 1.9e-24 115.9 75 73.3
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 9.3e-24 113.6 65 81.5
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 1.6e-23 112.8 67 80.6
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.1e-23 112.5 65 80.0
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 2.1e-23 112.5 92 64.1
Dinv12730 Davidia involucrata HOM05D003588 ORTHO05D004252 2.7e-23 112.1 63 84.1
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 7.9e-23 110.5 65 80.0
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 1.3e-22 109.8 75 72.0
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.8e-22 109.4 86 64.0
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 2.3e-22 109.0 65 76.9
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 6.7e-22 107.5 86 61.6
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 1.1e-21 106.7 62 79.0
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 1.5e-21 106.3 75 73.3
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 2.5e-21 105.5 62 79.0
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 9.6e-21 103.6 65 76.9
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 3.4e-18 95.1 60 85.0
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 5.5e-16 87.8 60 68.3
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 1.2e-15 86.7 56 71.4
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.5e-13 79.7 65 56.9
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 1.3e-12 76.6 67 52.2
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 1.5e-10 69.7 51 72.5
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 4.5e-10 68.2 59 54.2
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 1.1e-08 63.5 57 54.4
TAR374G0202 Trochodendron aralioides HOM05D003588 ORTHO05D004252 1.9e-08 62.8 34 82.4
TAR374G0225 Trochodendron aralioides HOM05D003588 ORTHO05D004252 4.2e-08 61.6 34 82.4
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.1e-07 59.3 54 46.3
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.1e-07 59.3 54 46.3
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 4.6e-07 58.2 60 46.7


User provided reference genes

Program Settings