Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 0.0e+00 2603.5 1294 100.0
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 0.0e+00 1773.4 1308 70.3
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 0.0e+00 1768.4 1311 69.6
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 0.0e+00 1477.6 1311 62.0
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 0.0e+00 1181.8 1302 53.1
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 0.0e+00 1165.2 1301 50.3
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 0.0e+00 1155.6 1314 51.1
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 0.0e+00 1150.2 1315 51.1
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 0.0e+00 1096.3 1305 49.5
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 0.0e+00 1078.5 1297 48.5
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 5.3e-307 1058.1 1312 48.1
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 6.1e-303 1044.6 1432 44.6
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 3.3e-301 1038.9 1345 46.8
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 6.1e-295 1018.1 1344 46.8
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 1.2e-290 1003.8 1303 46.6
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.2e-287 993.8 1329 46.3
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.6e-287 993.4 1358 45.7
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 2.2e-284 983.0 1321 46.3
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 4.1e-283 978.8 1259 46.8
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.2e-279 967.2 1351 45.3
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 1.0e-265 921.0 1310 43.5
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 2.3e-265 919.8 1279 44.6
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 1.8e-262 910.2 1389 41.6
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 1.3e-252 877.5 1457 38.4
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 4.9e-244 849.0 1248 43.7
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 3.0e-241 839.7 1368 39.3
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 7.3e-240 835.1 1284 41.9
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 6.4e-236 822.0 1373 39.5
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 5.4e-227 792.3 1308 39.3
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.1e-226 790.4 1624 36.0
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 6.6e-225 785.4 1287 40.6
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 7.6e-221 771.9 1346 39.2
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 7.6e-221 771.9 1359 38.9
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 1.2e-218 764.6 1260 40.3
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 6.2e-215 752.3 1320 38.3
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 8.1e-215 751.9 1350 38.4
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 1.2e-213 748.0 1304 38.7
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 7.6e-213 745.3 1341 38.9
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 5.5e-211 739.2 1377 38.7
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 3.5e-210 736.5 1311 38.4
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 2.3e-209 733.8 1303 39.4
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 3.0e-209 733.4 1222 41.2
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.5e-208 731.1 1327 38.3
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 9.6e-208 728.4 1299 37.8
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 3.7e-207 726.5 1300 38.4
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 3.1e-206 723.4 1300 38.2
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 9.0e-206 721.8 1380 36.4
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 2.2e-204 717.2 1369 36.4
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 2.9e-204 716.8 926 47.0
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 4.2e-203 713.0 1326 37.6
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 4.6e-202 709.5 1341 37.2
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 3.1e-198 696.8 1350 36.7
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 1.2e-197 694.9 1320 37.0
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 1.0e-196 691.8 1364 36.4
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 2.9e-196 690.3 1326 35.7
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 6.5e-196 689.1 1383 36.4
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 6.5e-196 689.1 1383 36.4
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 1.1e-195 688.3 1426 35.4
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 4.2e-195 686.4 1380 35.7
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.2e-194 684.9 958 44.1
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 9.7e-192 675.2 1254 39.2
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 2.8e-191 673.7 1392 35.3
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 4.1e-190 669.8 1519 34.0
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 9.1e-190 668.7 1371 36.7
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 2.2e-188 664.1 1353 35.0
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 2.1e-186 657.5 1294 35.9
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 6.1e-186 656.0 1370 34.8
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 5.1e-185 652.9 1335 36.0
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 9.7e-184 648.7 1300 35.5
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 1.2e-181 641.7 1303 35.9
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 6.5e-180 636.0 1116 38.7
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 6.7e-177 625.9 1335 34.0
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 3.3e-176 623.6 1312 34.7
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 2.9e-172 610.5 1293 34.3
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 2.5e-171 607.4 857 45.7
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 7.2e-171 605.9 1291 33.8
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 1.3e-167 595.1 1541 31.8
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 8.2e-167 592.4 1541 31.8
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.1e-162 577.8 1412 34.6
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 4.4e-160 570.1 1331 33.7
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 1.1e-158 565.5 1350 33.3
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 3.1e-158 563.9 1316 33.1
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 7.0e-158 562.8 964 41.4
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.2e-157 562.0 964 41.4
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 6.5e-156 556.2 1546 31.1
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 1.8e-150 538.1 1537 29.2
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 1.0e-145 522.3 686 47.1
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 2.7e-141 507.7 1256 32.6
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 2.7e-141 507.7 1313 32.4
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 2.8e-138 497.7 633 44.9
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 5.8e-136 490.0 1074 34.8
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 2.2e-127 461.5 1402 29.7
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.6e-122 445.3 1299 29.4
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 2.6e-120 438.0 1323 28.7
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 3.4e-120 437.6 1320 28.9
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.1e-115 422.5 1297 29.1
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 2.3e-108 398.3 1352 28.1
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 1.5e-104 385.6 685 37.5
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 7.1e-102 376.7 275 65.1
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 9.3e-102 376.3 363 56.7
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.3e-100 371.7 887 32.6
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 8.7e-100 369.8 285 61.8
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 7.4e-99 366.7 814 34.0
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 2.0e-88 332.0 456 46.1
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.8e-81 308.9 313 55.3
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 1.2e-80 306.2 1307 25.6
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 2.0e-64 252.3 740 27.3
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.3e-63 249.6 218 60.1
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.2e-63 248.8 220 60.5
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 1.9e-54 219.2 215 52.6
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.2e-47 195.7 149 66.4
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.2e-46 191.8 118 78.0
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 2.2e-42 179.1 125 72.0
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 4.2e-38 164.9 116 69.8
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 4.4e-35 154.8 241 42.3
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 4.9e-34 151.4 133 56.4
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.2e-32 146.7 176 46.6
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 6.6e-31 141.0 133 52.6
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 9.8e-27 127.1 69 84.1
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.9e-26 125.6 321 34.6
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.9e-26 124.8 90 67.8
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.2e-24 120.2 68 80.9
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 2.7e-24 119.0 82 65.9
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 3.5e-24 118.6 68 79.4
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.4e-20 106.7 76 67.1
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 1.2e-19 103.6 217 31.8
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 2.0e-19 102.8 98 55.1
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 3.4e-19 102.1 82 62.2
Aqoxy2G01048 Aquilegia oxysepala HOM05D000003 ORTHO05D000651 2.9e-18 99.0 201 33.8
Oeu028721.1 Olea europaea HOM05D004942 ORTHO05D005687 1.0e-15 90.5 116 44.8
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 4.3e-14 85.1 128 35.9
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 2.8e-13 82.4 68 57.4
TPR.G8934 Trifolium pratense HOM05D004942 ORTHO05D005687 1.3e-10 73.6 107 41.1
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 2.9e-10 72.4 130 35.4
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 7.8e-08 64.3 117 29.1
SHI10795 Sapria himalayana HOM05D004942 ORTHO05D005687 1.3e-07 63.5 40 70.0
Actinidia16149 Actinidia chinensis HOM05D057958 ORTHO05D005687 3.9e-07 62.0 134 32.1
Actinidia26534 Actinidia chinensis HOM05D057958 ORTHO05D005687 3.9e-07 62.0 134 32.1
PSO541G2259 Papaver somniferum HOM05D001049 ORTHO05D049301 6.6e-07 61.2 90 41.1


User provided reference genes

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