Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.0e-193 679.9 343 100.0
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 7.5e-59 231.9 141 85.8
QL07p014182 Quercus lobata HOM05D001633 ORTHO05D006978 4.7e-37 159.5 102 82.4
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 5.2e-36 156.0 104 78.8
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 9.2e-33 145.2 84 94.0
QL02p069511 Quercus lobata HOM05D000023 ORTHO05D000014 2.6e-27 127.1 81 82.7
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.1e-25 121.7 94 66.0
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 3.2e-25 120.2 79 70.9
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 5.4e-25 119.4 94 62.8
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 9.3e-25 118.6 105 57.1
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-24 118.2 99 63.6
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-24 118.2 99 63.6
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 1.6e-24 117.9 103 59.2
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 2.1e-24 117.5 99 55.6
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 2.1e-24 117.5 95 56.8
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.7e-24 117.1 93 61.3
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 2.7e-24 117.1 94 61.7
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.7e-24 117.1 79 69.6
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 3.5e-24 116.7 79 69.6
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 3.5e-24 116.7 103 58.3
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 3.5e-24 116.7 103 58.3
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 7.8e-24 115.5 95 55.8
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.0e-23 115.2 88 63.6
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 5.1e-23 112.8 95 65.3
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.1e-23 112.8 95 65.3
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 5.1e-23 112.8 85 63.5
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.1e-22 111.7 89 60.7
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.1e-22 111.7 95 61.1
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.1e-22 111.7 95 63.2
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.5e-22 111.3 107 51.4
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.5e-22 111.3 95 63.2
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.9e-22 110.9 87 66.7
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-22 110.9 95 64.2
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.9e-22 110.9 79 64.6
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.5e-22 110.5 109 56.0
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 2.5e-22 110.5 95 61.1
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.5e-22 110.5 87 66.7
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 3.3e-22 110.2 79 68.4
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 5.6e-22 109.4 91 60.4
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 5.6e-22 109.4 108 53.7
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 5.6e-22 109.4 82 65.9
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 7.3e-22 109.0 80 67.5
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 9.6e-22 108.6 97 54.6
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.6e-22 108.6 89 65.2
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 1.3e-21 108.2 82 64.6
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.6e-21 107.8 89 62.9
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.6e-21 107.8 84 61.9
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.1e-21 107.5 93 61.3
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 2.1e-21 107.5 114 50.0
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 2.1e-21 107.5 97 55.7
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.1e-21 107.5 78 67.9
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 2.8e-21 107.1 84 63.1
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.8e-21 107.1 101 56.4
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.8e-21 107.1 101 56.4
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 4.8e-21 106.3 78 64.1
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 4.8e-21 106.3 98 57.1
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 6.2e-21 105.9 79 62.0
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 8.1e-21 105.5 103 55.3
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 1.1e-20 105.1 78 65.4
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.1e-20 105.1 95 57.9
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.4e-20 104.8 96 60.4
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.8e-20 104.4 79 65.8
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 1.8e-20 104.4 79 63.3
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.4e-20 104.0 79 65.8
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.4e-20 104.0 79 65.8
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 2.4e-20 104.0 90 58.9
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 2.4e-20 104.0 105 52.4
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.1e-20 103.6 79 64.6
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 3.1e-20 103.6 100 54.0
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 3.1e-20 103.6 81 63.0
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 4.0e-20 103.2 96 57.3
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 4.0e-20 103.2 96 57.3
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 4.0e-20 103.2 104 51.0
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 4.0e-20 103.2 78 65.4
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 5.3e-20 102.8 79 65.8
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 5.3e-20 102.8 79 65.8
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 5.3e-20 102.8 79 64.6
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 5.3e-20 102.8 79 65.8
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 5.3e-20 102.8 79 65.8
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 5.3e-20 102.8 79 65.8
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 5.3e-20 102.8 79 64.6
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 6.9e-20 102.4 89 59.6
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 6.9e-20 102.4 100 53.0
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 6.9e-20 102.4 80 61.2
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 6.9e-20 102.4 88 58.0
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 6.9e-20 102.4 91 54.9
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 6.9e-20 102.4 106 50.9
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 9.0e-20 102.1 80 63.8
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 9.0e-20 102.1 79 64.6
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 9.0e-20 102.1 80 58.8
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.2e-19 101.7 82 62.2
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 1.2e-19 101.7 82 62.2
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.2e-19 101.7 79 64.6
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.2e-19 101.7 78 62.8
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-19 101.3 79 63.3
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.5e-19 101.3 79 63.3
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 1.5e-19 101.3 78 65.4
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.5e-19 101.3 80 60.0
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.5e-19 101.3 109 47.7
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.5e-19 101.3 113 48.7
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-19 100.9 79 64.6
Cfa019944 Carpinus fangiana HOM05D001633 ORTHO05D006978 2.0e-19 100.9 93 58.1
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 2.0e-19 100.9 84 58.3
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 2.6e-19 100.5 78 64.1
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 2.6e-19 100.5 82 61.0
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 2.6e-19 100.5 92 58.7
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 3.4e-19 100.1 79 60.8
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.4e-19 100.1 79 62.0
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 3.4e-19 100.1 79 62.0
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 4.4e-19 99.8 79 62.0
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 4.4e-19 99.8 79 62.0
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 4.4e-19 99.8 79 62.0
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 4.4e-19 99.8 80 60.0
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 5.8e-19 99.4 78 62.8
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 9.9e-19 98.6 78 60.3
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.7e-18 97.8 85 58.8
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 1.7e-18 97.8 91 52.7
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 2.2e-18 97.4 79 58.2
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 2.9e-18 97.1 80 58.8
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 3.8e-18 96.7 101 53.5
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 4.9e-18 96.3 99 55.6
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 4.9e-18 96.3 78 60.3
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.4e-18 95.5 89 52.8
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.4e-17 94.7 80 60.0
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.9e-17 94.4 76 56.6
CiPaw.10G044200 Carya illinoinensis HOM05D001633 ORTHO05D006978 5.4e-17 92.8 94 55.3
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 5.4e-17 92.8 83 56.6
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 5.4e-17 92.8 79 54.4
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 9.3e-17 92.0 92 54.3
Prupe.7G022300 Prunus persica HOM05D001633 ORTHO05D006978 1.2e-16 91.7 100 53.0
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 2.1e-16 90.9 78 52.6
QL09p020484 Quercus lobata HOM05D057365 ORTHO05D000022 3.5e-16 90.1 53 84.9
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 3.5e-16 90.1 79 59.5
GSVIVG01025824001 Vitis vinifera HOM05D001633 ORTHO05D006978 3.5e-16 90.1 90 52.2
Potri.016G029700 Populus trichocarpa HOM05D001633 ORTHO05D006978 1.7e-15 87.8 93 51.6
MD12G1111600 Malus domestica HOM05D001633 ORTHO05D006978 2.3e-15 87.4 113 52.2
TWI74G0653 Tripterygium wilfordii HOM05D001633 ORTHO05D006978 3.0e-15 87.0 93 48.4
Haze_20294 Corylus avellana HOM05D001633 ORTHO05D006978 3.9e-15 86.7 70 62.9
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 6.6e-15 85.9 79 53.2
Dinv10882 Davidia involucrata HOM05D001633 ORTHO05D006978 2.5e-14 84.0 93 52.7
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 4.3e-14 83.2 69 58.0
Sabra06G0021700 Salix brachista HOM05D001633 ORTHO05D006978 4.3e-14 83.2 92 50.0
Potri.006G032500 Populus trichocarpa HOM05D001633 ORTHO05D006978 5.6e-14 82.8 93 49.5
TAR623G1603 Trochodendron aralioides HOM05D001633 ORTHO05D006978 5.6e-14 82.8 93 47.3
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 1.3e-13 81.6 76 50.0
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.6e-13 81.3 69 59.4
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.6e-13 81.3 78 52.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.8e-13 80.5 77 54.5
Ciclev10012325m.g Citrus clementina HOM05D001633 ORTHO05D006978 4.8e-13 79.7 87 52.9
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.4e-12 78.2 86 47.7
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.8e-12 77.8 85 48.2
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 6.9e-12 75.9 76 52.6
MD14G1100800 Malus domestica HOM05D001633 ORTHO05D006978 1.5e-11 74.7 91 49.5
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.0e-11 74.3 56 67.9
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.0e-11 74.3 56 67.9
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 2.0e-11 74.3 56 67.9
Atru.chr1.1514 Acer truncatum HOM05D001633 ORTHO05D006978 4.5e-11 73.2 93 47.3
Sabra16G0033600 Salix brachista HOM05D001633 ORTHO05D006978 9.9e-11 72.0 89 48.3
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 6.4e-10 69.3 74 51.4
Manes.08G065800 Manihot esculenta HOM05D001633 ORTHO05D006978 8.4e-10 68.9 93 45.2
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.4e-09 66.2 52 59.6
Lj5A167T35 Lonicera japonica HOM05D001633 ORTHO05D006978 5.4e-09 66.2 92 43.5
Aqoxy4G00837 Aquilegia oxysepala HOM05D001633 ORTHO05D006978 1.2e-08 65.1 85 41.2
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-08 65.1 48 66.7
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.1e-08 64.3 44 68.2
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.5e-08 63.5 75 44.0
CANSAT64G1525 Cannabis sativa HOM05D001633 ORTHO05D006978 6.0e-08 62.8 89 43.8
Duzib128G0040 Durio zibethinus HOM05D001633 ORTHO05D006978 6.0e-08 62.8 93 47.3
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-07 62.0 44 65.9
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-07 62.0 47 61.7
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 2.3e-07 60.8 45 62.2
Nn7g37072 Nelumbo nucifera HOM05D001633 ORTHO05D006978 3.9e-07 60.1 89 40.4
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.5e-06 57.4 42 61.9
Cc09_g07680 Coffea canephora HOM05D001633 ORTHO05D006978 7.4e-06 55.8 91 37.4


User provided reference genes

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