Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL03p008751 Quercus lobata HOM05D004351 ORTHO05D005196 5.4e-46 187.2 88 100.0
QL06p042225 Quercus lobata HOM05D004351 ORTHO05D005196 5.6e-27 124.0 62 95.2
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 1.8e-12 75.9 35 100.0
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 8.8e-12 73.6 35 94.3
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 8.8e-12 73.6 35 94.3
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 8.8e-12 73.6 35 94.3
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.5e-11 72.8 35 94.3
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 1.5e-11 72.8 35 94.3
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 2.0e-11 72.4 35 94.3
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 2.0e-11 72.4 41 80.5
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 2.0e-11 72.4 35 94.3
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 2.0e-11 72.4 35 91.4
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 2.0e-11 72.4 35 91.4
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 2.0e-11 72.4 35 91.4
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 2.0e-11 72.4 35 94.3
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 2.0e-11 72.4 37 91.9
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 2.5e-11 72.0 35 91.4
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 2.5e-11 72.0 35 88.6
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 2.5e-11 72.0 35 94.3
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 2.5e-11 72.0 35 94.3
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 2.5e-11 72.0 35 91.4
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 3.3e-11 71.6 39 82.1
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 3.3e-11 71.6 35 91.4
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 4.3e-11 71.2 35 91.4
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 4.3e-11 71.2 35 91.4
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 4.3e-11 71.2 39 82.1
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 4.3e-11 71.2 35 91.4
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 4.3e-11 71.2 35 91.4
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 4.3e-11 71.2 35 91.4
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 4.3e-11 71.2 35 91.4
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 4.3e-11 71.2 35 91.4
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 4.3e-11 71.2 35 91.4
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 5.7e-11 70.9 35 88.6
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 5.7e-11 70.9 35 91.4
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 5.7e-11 70.9 35 88.6
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 5.7e-11 70.9 35 88.6
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 5.7e-11 70.9 35 91.4
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 5.7e-11 70.9 35 91.4
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 7.4e-11 70.5 39 82.1
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 91.4
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 91.4
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 88.6
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 85.7
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 7.4e-11 70.5 35 91.4
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 9.7e-11 70.1 35 85.7
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 9.7e-11 70.1 35 91.4
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 9.7e-11 70.1 35 85.7
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 9.7e-11 70.1 35 85.7
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 9.7e-11 70.1 45 68.9
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 9.7e-11 70.1 35 91.4
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 1.3e-10 69.7 35 88.6
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 1.3e-10 69.7 35 85.7
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 1.3e-10 69.7 35 88.6
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 1.3e-10 69.7 35 88.6
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 1.3e-10 69.7 35 85.7
vmacro04976 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 1.3e-10 69.7 35 88.6
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 1.7e-10 69.3 35 88.6
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 1.7e-10 69.3 35 85.7
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 1.7e-10 69.3 35 88.6
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 1.7e-10 69.3 35 88.6
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 1.7e-10 69.3 35 85.7
Psat6g063440 Pisum sativum HOM05D004351 ORTHO05D005196 1.7e-10 69.3 35 85.7
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 88.6
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 88.6
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 88.6
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 88.6
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 88.6
Cc00_g05720 Coffea canephora HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 85.7
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 88.6
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 82.9
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 85.7
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 88.6
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 88.6
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 2.2e-10 68.9 35 85.7
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 2.2e-10 68.9 69 55.1
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 2.2e-10 68.9 43 69.8
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 2.8e-10 68.6 39 79.5
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 2.8e-10 68.6 35 88.6
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 2.8e-10 68.6 35 88.6
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 2.8e-10 68.6 35 88.6
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 2.8e-10 68.6 69 55.1
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 2.8e-10 68.6 35 88.6
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 2.8e-10 68.6 35 88.6
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 3.7e-10 68.2 35 88.6
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 3.7e-10 68.2 35 82.9
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 4.8e-10 67.8 35 85.7
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 4.8e-10 67.8 35 85.7
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 4.8e-10 67.8 35 85.7
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 4.8e-10 67.8 39 79.5
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 8.2e-10 67.0 35 85.7
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 8.2e-10 67.0 35 85.7
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 8.2e-10 67.0 35 85.7
Psat0s4007g0120 Pisum sativum HOM05D004351 ORTHO05D005196 8.2e-10 67.0 35 82.9
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 1.1e-09 66.6 35 82.9
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 1.1e-09 66.6 35 82.9
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 1.1e-09 66.6 69 53.6
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 1.4e-09 66.2 35 82.9
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.4e-09 66.2 35 82.9
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 1.4e-09 66.2 35 82.9
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 1.8e-09 65.9 35 80.0
Glyma.08G177502 Glycine max HOM05D004351 ORTHO05D005196 1.8e-09 65.9 35 80.0
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 3.1e-09 65.1 35 82.9
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 3.1e-09 65.1 35 85.7
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 3.1e-09 65.1 35 85.7
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 3.1e-09 65.1 42 66.7
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 4.1e-09 64.7 35 82.9
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 4.1e-09 64.7 35 85.7
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 4.1e-09 64.7 35 80.0
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 4.1e-09 64.7 35 82.9
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 5.3e-09 64.3 35 77.1
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 5.3e-09 64.3 35 82.9
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 9.1e-09 63.5 35 82.9
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 1.2e-08 63.2 35 77.1
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 1.5e-08 62.8 35 80.0
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 2.0e-08 62.4 49 67.3
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 2.6e-08 62.0 35 82.9
LjContig00564g0001423 Lotus japonicus HOM05D004351 ORTHO05D005196 7.7e-08 60.5 34 73.5
Sc09g0005690 Simmondsia chinensis HOM05D004351 ORTHO05D005196 1.0e-07 60.1 37 83.8
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 1.3e-07 59.7 35 68.6
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 1.7e-07 59.3 35 71.4
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 5.0e-07 57.8 65 44.6
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 6.5e-07 57.4 35 68.6
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 8.5e-07 57.0 35 68.6
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 1.1e-06 56.6 35 68.6


User provided reference genes

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