Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p103028 Quercus lobata HOM05D043302 ORTHO05D012096 1.9e-161 572.4 280 100.0
QL02p102391 Quercus lobata HOM05D043302 ORTHO05D012096 5.6e-161 570.9 280 99.6
Prupe.1G582800 Prunus persica HOM05D000706 ORTHO05D001554 8.3e-32 141.7 334 32.9
Manes.10G110800 Manihot esculenta HOM05D000706 ORTHO05D001554 1.4e-31 141.0 291 38.1
Lj6g0005324 Lotus japonicus HOM05D000706 ORTHO05D001554 1.1e-28 131.3 290 32.4
MD15G1440800 Malus domestica HOM05D000706 ORTHO05D012096 3.1e-26 123.2 311 33.8
TWI59G0710 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 3.2e-23 113.2 327 32.1
Duzib132G0489 Durio zibethinus HOM05D000706 ORTHO05D001554 7.1e-23 112.1 293 31.1
Medtr3g064290 Medicago truncatula HOM05D000706 ORTHO05D001554 2.7e-22 110.2 297 33.0
Dinv29666 Davidia involucrata HOM05D000706 ORTHO05D001554 4.6e-22 109.4 315 30.5
GSVIVG01023195001 Vitis vinifera HOM05D000706 ORTHO05D001554 1.3e-21 107.8 302 30.5
MELO3C016482.2 Cucumis melo HOM05D000706 ORTHO05D001554 2.3e-21 107.1 332 27.7
Thecc.02G012800 Theobroma cacao HOM05D000706 ORTHO05D001554 1.1e-20 104.8 282 31.2
RcHm_v2.0_Chr6g0272281 Rosa chinensis HOM05D000706 ORTHO05D012096 2.5e-20 103.6 283 31.1
TAR376G1119 Trochodendron aralioides HOM05D000706 ORTHO05D001554 2.5e-20 103.6 323 29.4
Gohir.D04G177400 Gossypium hirsutum HOM05D000706 ORTHO05D001554 3.3e-20 103.2 285 32.3
Gorai.012G170300 Gossypium raimondii HOM05D000706 ORTHO05D001554 4.3e-20 102.8 285 32.3
Glyma.11G208500 Glycine max HOM05D000706 ORTHO05D001554 2.1e-19 100.5 103 52.4
Medtr3g064250 Medicago truncatula HOM05D000706 ORTHO05D001554 2.8e-19 100.1 293 27.6
ClCG10G007330 Citrullus lanatus HOM05D000706 ORTHO05D001554 4.7e-19 99.4 280 29.3
Medtr3g064260 Medicago truncatula HOM05D000706 ORTHO05D001554 6.2e-19 99.0 299 31.1
Phvul.006G085500 Phaseolus vulgaris HOM05D000706 ORTHO05D012096 2.4e-18 97.1 96 52.1
VMungo0540G0276 Vigna mungo HOM05D000706 ORTHO05D012096 8.9e-18 95.1 280 29.3
Medtr3g064270 Medicago truncatula HOM05D000706 ORTHO05D001554 1.2e-17 94.7 294 31.3
Rhsim06G0200400 Rhododendron simsii HOM05D017178 ORTHO05D012096 1.5e-17 94.4 290 28.6
Lj5A276G88 Lonicera japonica HOM05D017178 ORTHO05D012096 2.0e-17 94.0 282 31.9
Thecc.01G144400 Theobroma cacao HOM05D000706 ORTHO05D001554 4.4e-17 92.8 316 28.5
Lalb_Chr18g0053861 Lupinus albus HOM05D000706 ORTHO05D012096 7.6e-17 92.0 104 47.1
Ca_09585_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 1.7e-16 90.9 280 28.6
Medtr3g064280 Medicago truncatula HOM05D000706 ORTHO05D001554 2.9e-16 90.1 295 27.8
CSS0020817 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D001554 8.4e-16 88.6 282 29.4
FAN27G2281 Fragaria x ananassa HOM05D000706 ORTHO05D001554 8.4e-16 88.6 289 28.4
Lj3P1070T22 Lonicera japonica HOM05D017178 ORTHO05D012096 8.4e-16 88.6 170 34.1
arahy.Tifrunner.gnm1.ann1.3KND2G Arachis hypogaea HOM05D000706 ORTHO05D001554 1.1e-15 88.2 147 36.7
PSO447G0242 Papaver somniferum HOM05D000706 ORTHO05D001554 1.4e-15 87.8 292 27.7
Sed0004427 Sechium edule HOM05D000706 ORTHO05D001554 1.9e-15 87.4 282 28.0
COL.COLO4_17687 Corchorus olitorius HOM05D000706 ORTHO05D001554 3.2e-15 86.7 314 28.0
TAR628G1033 Trochodendron aralioides HOM05D000706 ORTHO05D012096 3.2e-15 86.7 195 31.3
Sed0026982 Sechium edule HOM05D000706 ORTHO05D012096 4.2e-15 86.3 106 43.4
Actinidia16541 Actinidia chinensis HOM05D000706 ORTHO05D001554 5.4e-15 85.9 279 29.4
SHI25322 Sapria himalayana HOM05D000706 ORTHO05D012096 7.1e-15 85.5 280 29.6
Dinv09371 Davidia involucrata HOM05D000706 ORTHO05D001554 2.1e-14 84.0 285 28.1
Ca_17061_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 2.7e-14 83.6 280 27.5
EL10Ac4g09693 Beta vulgaris HOM05D000706 ORTHO05D001554 3.5e-14 83.2 285 26.7
PSO210G5296 Papaver somniferum HOM05D000706 ORTHO05D001554 3.5e-14 83.2 292 28.1
CiPaw.06G001000 Carya illinoinensis HOM05D000706 ORTHO05D001554 4.6e-14 82.8 276 25.4
FvH4_2g12310 Fragaria vesca HOM05D000706 ORTHO05D001554 6.0e-14 82.4 289 27.7
arahy.Tifrunner.gnm1.ann1.2RX12T Arachis hypogaea HOM05D000706 ORTHO05D001554 2.3e-13 80.5 156 35.3
Ciclev10026382m.g Citrus clementina HOM05D000706 ORTHO05D001554 3.9e-13 79.7 281 27.0
Sabra04G0084500 Salix brachista HOM05D000706 ORTHO05D001554 5.1e-13 79.3 284 27.8
Hma1.2p1_0157F.1_g069030 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 1.5e-12 77.8 96 38.5
Hma1.2p1_1368F.1_g278556 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 1.5e-12 77.8 96 38.5
Potri.004G133600 Populus trichocarpa HOM05D000706 ORTHO05D001554 1.5e-12 77.8 275 26.2
CARHR190040 Cardamine hirsuta HOM05D000706 ORTHO05D001554 1.9e-12 77.4 278 27.3
Lj3P665T11 Lonicera japonica HOM05D017178 ORTHO05D012096 1.9e-12 77.4 108 41.7
FvH4_1g25810 Fragaria vesca HOM05D000706 ORTHO05D001554 3.3e-12 76.6 282 27.3
Duzib147G0053 Durio zibethinus HOM05D000706 ORTHO05D001554 5.6e-12 75.9 278 25.9
TWI79G1627 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 5.6e-12 75.9 281 23.5
Cfa019817 Carpinus fangiana HOM05D000706 ORTHO05D001554 3.6e-11 73.2 288 26.7
FAN26G0079 Fragaria x ananassa HOM05D000706 ORTHO05D001554 3.6e-11 73.2 282 27.0
FAN28G2355 Fragaria x ananassa HOM05D000706 ORTHO05D001554 3.6e-11 73.2 278 27.0
GSVIVG01023170001 Vitis vinifera HOM05D000706 ORTHO05D012096 3.6e-11 73.2 95 37.9
Prupe.4G286800 Prunus persica HOM05D000706 ORTHO05D001554 4.8e-11 72.8 281 25.3
GSVIVG01000269001 Vitis vinifera HOM05D000706 ORTHO05D001554 4.8e-11 72.8 90 37.8
MD15G1140400 Malus domestica HOM05D000706 ORTHO05D001554 8.1e-11 72.0 283 26.1
Cc02_g27620 Coffea canephora HOM05D000706 ORTHO05D001554 1.8e-10 70.9 93 40.9
FAN19G2540 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.4e-10 70.5 278 26.3
Medtr6g065790 Medicago truncatula HOM05D000706 ORTHO05D001554 2.4e-10 70.5 156 32.1
Aqoxy7G00126_Aqoxy7G00127 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 3.1e-10 70.1 297 25.9
EL10Ac6g14021 Beta vulgaris HOM05D000706 ORTHO05D001554 4.0e-10 69.7 88 37.5
GSVIVG01023197001 Vitis vinifera HOM05D000706 ORTHO05D012096 5.3e-10 69.3 88 39.8
FAN23G1421 Fragaria x ananassa HOM05D000706 ORTHO05D001554 9.0e-10 68.6 278 26.6
SalBow6G2696 Salvia bowleyana HOM05D000706 ORTHO05D001554 9.0e-10 68.6 94 38.3
Migut.B00732 Erythranthe guttata HOM05D000706 ORTHO05D001554 1.2e-09 68.2 277 26.4
PGSC0003DMG400006879 Solanum tuberosum HOM05D000706 ORTHO05D001554 1.2e-09 68.2 99 38.4
Atru.chr4.14_Atru.chr4.15 Acer truncatum HOM05D000706 ORTHO05D001554 2.0e-09 67.4 300 25.0
Thhalv10013270m.g Eutrema salsugineum HOM05D000706 ORTHO05D001554 4.4e-09 66.2 289 26.3
RcHm_v2.0_Chr3g0484911 Rosa chinensis HOM05D000706 ORTHO05D001554 5.8e-09 65.9 86 40.7
Ca_25266_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 1.3e-08 64.7 110 38.2
Lj3P240T17 Lonicera japonica HOM05D017178 ORTHO05D012096 1.3e-08 64.7 120 35.0
Nitab4.5_0000634g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001554 1.3e-08 64.7 97 38.1
PGR102G2630 Punica granatum HOM05D000706 ORTHO05D001554 1.3e-08 64.7 104 37.5
Manes.17G021800 Manihot esculenta HOM05D000706 ORTHO05D001554 1.7e-08 64.3 89 33.7
MSTRG.16476 Avicennia marina HOM05D000706 ORTHO05D001554 2.2e-08 63.9 123 35.0
Lj2g0014541 Lotus japonicus HOM05D000706 ORTHO05D001554 2.9e-08 63.5 297 26.6
Peaxi162Scf00428g00822 Petunia axillaris HOM05D000706 ORTHO05D001554 3.8e-08 63.2 90 36.7
Solyc01g086950.4 Solanum lycopersicum HOM05D000706 ORTHO05D001554 3.8e-08 63.2 99 36.4
Nitab4.5_0003361g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001554 4.9e-08 62.8 97 37.1
Sopen01g033940 Solanum pennellii HOM05D000706 ORTHO05D001554 4.9e-08 62.8 99 36.4
CsaV3_7G023180 Cucumis sativus L. HOM05D000706 ORTHO05D001554 8.4e-08 62.0 96 41.7
Potri.011G078050 Populus trichocarpa HOM05D000706 ORTHO05D001554 8.4e-08 62.0 78 50.0
Ah.03g136980 Amaranthus hybridus HOM05D000572 ORTHO05D000840 1.1e-07 61.6 75 40.0
Migut.B01326 Erythranthe guttata HOM05D000706 ORTHO05D001554 1.4e-07 61.2 102 33.3
Ah.06g188410 Amaranthus hybridus HOM05D000706 ORTHO05D001554 1.9e-07 60.8 57 50.9
MELO3C012577.2 Cucumis melo HOM05D000706 ORTHO05D001554 1.9e-07 60.8 149 29.5
ATR1089G135 Amborella trichopoda HOM05D000706 ORTHO05D001554 2.4e-07 60.5 97 35.1
FAN20G1350 Fragaria x ananassa HOM05D000706 ORTHO05D001554 3.2e-07 60.1 254 25.2
PSO210G2352 Papaver somniferum HOM05D000706 ORTHO05D001633 3.2e-07 60.1 56 48.2
AL6G34760 Arabidopsis lyrata HOM05D000706 ORTHO05D001554 5.4e-07 59.3 287 25.1
ClCG09G022930 Citrullus lanatus HOM05D000706 ORTHO05D001554 5.4e-07 59.3 85 40.0
Sed0009552 Sechium edule HOM05D000706 ORTHO05D001554 5.4e-07 59.3 54 48.1
TAR636G1687 Trochodendron aralioides HOM05D000325 ORTHO05D012096 5.4e-07 59.3 94 34.0
Lalb_Chr24g0398681 Lupinus albus HOM05D000706 ORTHO05D001554 7.1e-07 58.9 300 24.0
PSO170G6368 Papaver somniferum HOM05D000706 ORTHO05D001633 7.1e-07 58.9 56 46.4
Potri.009G123800 Populus trichocarpa HOM05D000706 ORTHO05D001633 7.1e-07 58.9 61 41.0
Eucgr.H05064 Eucalyptus grandis HOM05D000706 ORTHO05D001554 9.3e-07 58.5 101 32.7
unitig_60.g25864 Utricularia gibba HOM05D000706 ORTHO05D001633 9.3e-07 58.5 63 41.3
Potri.004G161700 Populus trichocarpa HOM05D000706 ORTHO05D001633 1.2e-06 58.2 64 40.6
Ciclev10000408m.g Citrus clementina HOM05D000706 ORTHO05D001554 1.6e-06 57.8 100 40.0
ECA246G4574 Erigeron canadensis HOM05D000706 ORTHO05D001554 1.6e-06 57.8 195 26.7
Lalb_Chr22g0354261 Lupinus albus HOM05D000706 ORTHO05D001554 1.6e-06 57.8 90 38.9
EL10Ac9g21648 Beta vulgaris HOM05D000706 ORTHO05D001633 2.7e-06 57.0 55 45.5
FAN15G1757 Fragaria x ananassa HOM05D000706 ORTHO05D001633 2.7e-06 57.0 116 31.9
Lsat_1_v5_gn_9_121500 Lactuca sativa HOM05D000706 ORTHO05D001554 2.7e-06 57.0 181 24.3
SHI08584 Sapria himalayana HOM05D000706 ORTHO05D001633 2.7e-06 57.0 59 42.4
Rhsim09G0000400 Rhododendron simsii HOM05D000706 ORTHO05D001554 3.5e-06 56.6 112 33.0
SGA_v2.0_scaffold167G38452 Striga asiatica HOM05D000706 ORTHO05D001554 3.5e-06 56.6 95 32.6
Ciclev10027673m.g Citrus clementina HOM05D000706 ORTHO05D001633 4.6e-06 56.2 61 37.7
FAN20G0265 Fragaria x ananassa HOM05D000706 ORTHO05D001633 4.6e-06 56.2 118 32.2
Oeu064260.1 Olea europaea HOM05D000706 ORTHO05D001554 4.6e-06 56.2 57 50.9
HPP92_002466 Vanilla planifolia HOM05D000706 ORTHO05D001633 4.6e-06 56.2 83 33.7
Aa31LG3G18110 Aethionema arabicum HOM05D000706 ORTHO05D001554 6.0e-06 55.8 53 47.2
A02p40950 Brassica napus HOM05D000706 ORTHO05D001554 6.0e-06 55.8 108 36.1
BraA02t09041Z Brassica rapa HOM05D000706 ORTHO05D001554 6.0e-06 55.8 108 36.1
CAN.G170.123 Capsicum annuum HOM05D000706 ORTHO05D001554 6.0e-06 55.8 86 39.5
MD00G1040500 Malus domestica HOM05D000706 ORTHO05D001633 6.0e-06 55.8 72 33.3
PSO541G1600 Papaver somniferum HOM05D000706 ORTHO05D001554 6.0e-06 55.8 64 39.1
Sp6g34490 Schrenkiella parvula HOM05D000706 ORTHO05D001554 6.0e-06 55.8 285 27.0
Hund06279 Selenicereus undatus HOM05D000706 ORTHO05D001633 6.0e-06 55.8 56 41.1
Ah.01g019000 Amaranthus hybridus HOM05D000706 ORTHO05D001633 7.9e-06 55.5 104 29.8
AUR62006923 Chenopodium quinoa HOM05D000706 ORTHO05D001554 7.9e-06 55.5 58 48.3
FAN27G2992 Fragaria x ananassa HOM05D000706 ORTHO05D001633 7.9e-06 55.5 118 31.4
Gohir.D02G153300 Gossypium hirsutum HOM05D000706 ORTHO05D001554 7.9e-06 55.5 91 33.0
Gorai.005G172400 Gossypium raimondii HOM05D000706 ORTHO05D001554 7.9e-06 55.5 91 33.0
Manes.04G084000 Manihot esculenta HOM05D000706 ORTHO05D001633 7.9e-06 55.5 101 30.7
SEGI_23408 Sequoiadendron giganteum HOM05D000706 ORTHO05D001633 7.9e-06 55.5 99 30.3
Sc16g0009760 Simmondsia chinensis HOM05D000706 ORTHO05D001554 7.9e-06 55.5 285 25.3
SGA_v2.0_scaffold32G13215 Striga asiatica HOM05D000706 ORTHO05D001633 7.9e-06 55.5 113 27.4


User provided reference genes

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