Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.0e-298 1027.7 513 100.0
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.4e-287 992.3 513 96.1
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 3.4e-257 891.3 507 86.0
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 2.2e-248 862.1 489 86.9
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 7.4e-236 820.5 509 77.6
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 9.6e-236 820.1 511 78.1
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 4.0e-234 814.7 508 79.1
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 3.2e-231 805.1 507 77.7
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 1.2e-230 803.1 508 77.0
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.0e-229 800.0 511 76.5
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 3.9e-229 798.1 482 79.0
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 7.4e-228 793.9 507 76.3
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.3e-227 793.1 507 75.7
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.2e-227 792.3 507 75.9
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 4.8e-227 791.2 504 76.0
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 8.2e-227 790.4 483 78.7
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.1e-226 790.0 507 75.9
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 9.0e-226 786.9 507 76.1
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.6e-225 785.4 507 75.3
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 8.5e-224 780.4 480 79.2
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.0e-221 773.5 440 85.2
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 1.8e-221 772.7 481 77.1
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 3.0e-221 771.9 509 74.7
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 3.9e-221 771.5 507 73.8
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 5.1e-221 771.2 508 74.8
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 5.1e-221 771.2 510 72.9
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 5.1e-221 771.2 507 74.4
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 2.0e-220 769.2 504 74.8
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.7e-219 766.1 509 73.5
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 2.8e-219 765.4 507 73.0
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 4.8e-219 764.6 512 74.2
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 6.3e-219 764.2 481 76.1
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.8e-218 762.7 507 72.8
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 9.1e-218 760.4 507 73.0
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 9.1e-218 760.4 507 71.8
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 9.1e-218 760.4 508 73.4
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.5e-217 759.6 507 71.2
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 4.5e-217 758.1 511 71.4
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.9e-217 757.7 510 72.9
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 7.7e-217 757.3 507 72.8
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.3e-216 756.5 507 71.8
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 5.0e-216 754.6 508 72.2
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.5e-216 753.8 507 72.4
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.2e-215 751.9 507 72.4
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 3.2e-215 751.9 510 72.7
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 4.2e-215 751.5 509 73.5
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 4.2e-215 751.5 479 74.1
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 5.5e-215 751.1 508 71.7
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 1.6e-214 749.6 510 72.0
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 2.1e-214 749.2 509 72.1
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 3.6e-214 748.4 510 72.0
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 3.9e-213 745.0 510 71.4
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 6.7e-213 744.2 511 71.4
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 7.4e-212 740.7 508 70.3
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.7e-211 739.6 467 75.2
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.7e-211 739.6 508 72.0
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.7e-211 739.6 506 70.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 6.3e-211 737.6 473 74.6
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.8e-210 736.1 510 70.6
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.3e-210 734.6 508 71.7
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 7.0e-210 734.2 477 74.0
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 3.5e-209 731.9 510 72.0
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 6.5e-208 727.6 506 68.6
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.9e-207 726.1 508 70.7
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.2e-207 725.3 478 72.6
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 1.6e-206 723.0 510 69.4
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 6.1e-206 721.1 503 70.0
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 6.1e-206 721.1 509 69.4
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 2.3e-205 719.2 506 68.8
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.1e-204 716.8 509 69.7
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.5e-204 716.5 508 68.1
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 2.8e-203 712.2 506 67.8
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 2.4e-202 709.1 498 69.5
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 6.5e-200 701.0 503 67.4
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 2.5e-199 699.1 490 68.8
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 4.2e-199 698.4 496 66.7
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.6e-198 696.4 503 67.0
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.6e-198 696.4 483 68.7
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 3.6e-198 695.3 468 70.7
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 6.1e-198 694.5 488 67.6
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 8.0e-198 694.1 484 68.8
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 3.0e-197 692.2 487 68.4
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.0e-197 692.2 440 74.8
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.5e-196 689.9 440 73.9
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 7.5e-196 687.6 494 67.2
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.3e-195 686.8 494 66.8
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.3e-195 686.8 494 66.8
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.3e-195 686.8 494 66.8
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 8.3e-195 684.1 482 70.1
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 9.1e-194 680.6 487 66.3
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.2e-193 680.2 440 73.6
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.9e-191 672.9 508 67.3
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 8.0e-190 667.5 406 79.1
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.3e-189 666.0 466 68.2
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 4.0e-189 665.2 442 73.8
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.3e-187 660.2 485 65.8
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.7e-187 659.8 474 69.2
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 2.8e-187 659.1 499 63.5
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 6.3e-187 657.9 487 63.9
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.1e-186 657.1 481 65.3
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 4.2e-183 645.2 487 64.9
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.6e-182 643.3 477 62.5
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.8e-182 642.5 469 65.9
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 7.5e-180 634.4 418 73.0
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.3e-179 633.6 385 79.0
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.1e-175 620.5 473 64.1
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 6.2e-174 614.8 457 64.1
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.0e-173 614.0 488 64.5
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 4.0e-173 612.1 468 65.2
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 1.1e-170 604.0 440 66.6
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.3e-168 597.0 483 64.2
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.2e-154 549.3 481 57.4
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 1.3e-152 543.9 476 56.1
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 4.4e-148 528.9 347 75.8
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 9.9e-148 527.7 477 56.8
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 4.2e-146 522.3 316 81.3
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 7.8e-145 518.1 469 55.4
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 6.0e-137 491.9 326 71.5
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 4.8e-134 482.3 339 67.8
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 5.8e-132 475.3 501 49.7
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.1e-130 471.1 297 77.8
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 9.3e-130 468.0 297 77.4
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 3.2e-122 443.0 474 48.3
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 1.1e-114 417.9 282 69.9
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 4.8e-110 402.5 380 55.0
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 4.5e-100 369.4 250 68.8
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.4e-98 364.4 560 40.9
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 2.8e-94 350.1 607 37.4
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 2.3e-80 303.9 454 39.0
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.1e-77 295.0 478 39.3
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.5e-66 257.3 155 75.5
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.1e-57 227.6 213 54.5
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 3.3e-50 203.8 240 48.3
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 7.1e-45 186.0 177 55.9
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.7e-38 164.9 309 37.5
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 6.4e-38 162.9 108 78.7
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 2.4e-32 144.4 99 70.7
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 2.0e-31 141.4 87 72.4
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 3.4e-31 140.6 232 40.5
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 9.9e-31 139.0 117 54.7
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 2.8e-25 120.9 69 94.2
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 2.9e-22 110.9 72 72.2
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 6.7e-19 99.8 72 59.7
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 1.5e-18 98.6 93 53.8
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 2.2e-06 58.2 36 75.0


User provided reference genes

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