Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 7.6e-36 153.3 77 100.0
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 3.8e-27 124.4 76 81.6
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 4.2e-26 120.9 76 78.9
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 2.7e-25 118.2 76 77.6
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 2.7e-25 118.2 76 77.6
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 7.9e-25 116.7 76 77.6
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 7.9e-25 116.7 76 76.3
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 3.0e-24 114.8 76 75.0
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 3.0e-24 114.8 76 75.0
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 3.9e-24 114.4 76 77.6
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 3.9e-24 114.4 76 72.4
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 8.7e-24 113.2 76 75.0
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 8.7e-24 113.2 76 76.3
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 1.1e-23 112.8 76 75.0
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 1.1e-23 112.8 76 75.0
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 1.5e-23 112.5 76 76.3
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 3.3e-23 111.3 76 69.7
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 3.3e-23 111.3 76 72.4
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 7.4e-23 110.2 76 73.7
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 7.4e-23 110.2 76 72.4
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 7.4e-23 110.2 76 75.0
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 9.6e-23 109.8 75 72.0
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.3e-22 109.4 76 71.1
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.3e-22 109.4 76 71.1
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.6e-22 109.0 76 71.1
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 1.6e-22 109.0 76 73.7
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 3.7e-22 107.8 76 73.7
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 3.7e-22 107.8 76 73.7
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 3.7e-22 107.8 71 73.2
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 3.7e-22 107.8 76 75.0
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 6.3e-22 107.1 76 71.1
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 6.3e-22 107.1 76 73.7
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 6.3e-22 107.1 77 75.3
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 6.3e-22 107.1 76 69.7
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 8.2e-22 106.7 76 68.4
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 8.2e-22 106.7 73 71.2
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 8.2e-22 106.7 76 68.4
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 8.2e-22 106.7 76 72.4
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 1.8e-21 105.5 76 69.7
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 1.8e-21 105.5 76 71.1
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 1.8e-21 105.5 76 68.4
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 2.4e-21 105.1 73 69.9
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 3.1e-21 104.8 73 68.5
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 3.1e-21 104.8 76 72.4
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 3.1e-21 104.8 76 72.4
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 3.1e-21 104.8 76 72.4
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 3.1e-21 104.8 73 69.9
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 5.3e-21 104.0 76 67.1
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 6.9e-21 103.6 76 72.4
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 6.9e-21 103.6 76 69.7
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 9.0e-21 103.2 76 64.5
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 1.2e-20 102.8 74 70.3
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 1.2e-20 102.8 74 70.3
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.2e-20 102.8 76 69.7
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 2.6e-20 101.7 74 64.9
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 2.6e-20 101.7 74 64.9
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 3.4e-20 101.3 73 68.5
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 3.4e-20 101.3 73 68.5
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 3.4e-20 101.3 73 68.5
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 3.4e-20 101.3 76 67.1
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 4.5e-20 100.9 73 64.4
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 4.5e-20 100.9 76 65.8
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 5.9e-20 100.5 74 63.5
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 5.9e-20 100.5 74 63.5
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 5.9e-20 100.5 76 69.7
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 7.6e-20 100.1 74 62.2
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 1.0e-19 99.8 73 64.4
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 1.0e-19 99.8 73 68.5
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 1.3e-19 99.4 72 72.2
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.3e-19 99.4 76 64.5
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 1.3e-19 99.4 76 64.5
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.7e-19 99.0 76 68.4
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.7e-19 99.0 70 67.1
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.2e-19 98.6 72 72.2
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 2.2e-19 98.6 71 69.0
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 3.8e-19 97.8 75 70.7
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 5.0e-19 97.4 72 68.1
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 6.5e-19 97.1 76 59.2
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 6.5e-19 97.1 78 62.8
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 1.1e-18 96.3 76 63.2
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 1.1e-18 96.3 75 70.7
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 1.1e-18 96.3 75 70.7
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 1.4e-18 95.9 60 78.3
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 1.9e-18 95.5 72 59.7
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 1.9e-18 95.5 76 67.1
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 2.5e-18 95.1 76 60.5
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 2.5e-18 95.1 75 70.7
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 2.5e-18 95.1 75 58.7
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 2.5e-18 95.1 75 69.3
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 2.5e-18 95.1 72 65.3
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 2.5e-18 95.1 77 64.9
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 3.2e-18 94.7 76 60.5
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 7.2e-18 93.6 72 59.7
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 9.3e-18 93.2 73 61.6
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 9.3e-18 93.2 71 66.2
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 1.6e-17 92.4 68 64.7
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 2.1e-17 92.0 76 61.8
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 2.1e-17 92.0 76 60.5
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 2.7e-17 91.7 76 65.8
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 6.1e-17 90.5 61 70.5
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 7.9e-17 90.1 75 58.7
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 7.9e-17 90.1 70 61.4
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.8e-16 89.0 61 67.2
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.3e-16 88.6 76 57.9
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 3.0e-16 88.2 61 70.5
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 5.1e-16 87.4 76 56.6
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 5.1e-16 87.4 74 59.5
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.5e-15 85.9 67 58.2
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 4.3e-15 84.3 74 54.1
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 5.7e-15 84.0 62 62.9
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 9.7e-15 83.2 76 55.3
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 9.7e-15 83.2 68 58.8
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.6e-14 82.4 82 56.1
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 3.7e-14 81.3 69 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 1.1e-13 79.7 54 66.7
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 1.8e-13 79.0 57 61.4
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 1.8e-13 79.0 59 74.6
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 3.1e-13 78.2 54 66.7
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 6.9e-13 77.0 66 54.5
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 9.1e-13 76.6 67 58.2
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 2.6e-12 75.1 58 58.6
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 5.9e-12 73.9 58 56.9
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 7.7e-12 73.6 58 53.4
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 1.3e-11 72.8 74 44.6
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 1.3e-11 72.8 74 44.6
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 1.3e-11 72.8 74 44.6
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 1.7e-11 72.4 74 44.6
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 1.7e-11 72.4 74 44.6
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 8.5e-11 70.1 58 55.2
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 1.1e-10 69.7 78 52.6
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 1.4e-10 69.3 58 51.7
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 4.2e-10 67.8 59 66.1
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 8.8e-08 60.1 48 58.3
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 7.4e-07 57.0 53 56.6
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 8.2e-06 53.5 39 64.1


User provided reference genes

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