Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 1.4e-154 549.7 287 100.0
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 3.7e-136 488.4 287 86.4
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 8.3e-136 487.3 287 84.3
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 1.4e-135 486.5 287 85.4
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 5.4e-135 484.6 287 85.7
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 1.2e-134 483.4 287 84.3
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 1.1e-132 476.9 287 82.6
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 1.6e-131 473.0 287 82.2
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 3.0e-130 468.8 287 81.5
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 1.5e-129 466.5 287 83.6
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 1.5e-129 466.5 287 82.9
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 1.5e-129 466.5 287 81.5
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 7.5e-129 464.2 287 82.2
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 1.7e-128 463.0 287 79.4
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 2.2e-128 462.6 287 81.9
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.9e-128 462.2 287 80.8
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 4.9e-128 461.5 287 81.9
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 6.4e-128 461.1 287 79.8
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 8.3e-128 460.7 287 79.1
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 4.1e-127 458.4 282 80.1
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 5.4e-127 458.0 287 79.8
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 9.2e-127 457.2 287 80.1
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 2.7e-126 455.7 287 78.4
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 3.5e-126 455.3 287 79.1
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 7.8e-126 454.1 288 77.8
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 1.3e-125 453.4 287 78.4
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 3.9e-125 451.8 287 79.1
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 5.0e-125 451.4 287 79.1
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 5.0e-125 451.4 287 80.1
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 3.3e-124 448.7 287 75.6
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 4.3e-124 448.4 287 78.7
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 7.3e-124 447.6 287 77.7
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 1.1e-122 443.7 287 77.4
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 1.1e-122 443.7 287 79.8
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 1.1e-122 443.7 281 78.3
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 1.8e-122 443.0 287 75.6
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 5.2e-122 441.4 287 76.7
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 1.2e-121 440.3 287 76.3
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 5.8e-121 438.0 283 76.3
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 1.3e-120 436.8 287 77.4
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 4.9e-120 434.9 287 74.2
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 4.1e-119 431.8 279 76.3
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 7.0e-119 431.0 287 74.2
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 1.2e-118 430.3 287 74.6
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 1.2e-118 430.3 287 75.6
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 1.6e-118 429.9 279 76.0
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 4.6e-118 428.3 279 75.6
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 6.0e-118 427.9 279 74.9
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 6.0e-118 427.9 287 74.2
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 6.0e-118 427.9 287 73.5
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 1.0e-117 427.2 279 75.6
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 1.7e-117 426.4 279 74.6
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 3.9e-117 425.2 279 75.6
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 5.1e-117 424.9 279 74.9
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 8.6e-117 424.1 279 75.3
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 8.6e-117 424.1 279 75.3
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 8.6e-117 424.1 279 75.3
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 1.5e-116 423.3 281 74.4
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 3.3e-116 422.2 279 74.6
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 5.6e-116 421.4 287 72.1
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 5.6e-116 421.4 287 73.9
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 1.6e-115 419.9 279 73.8
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 1.6e-115 419.9 321 68.8
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 2.1e-115 419.5 282 73.8
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.1e-114 417.2 251 78.9
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 3.1e-114 415.6 282 74.1
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 5.2e-114 414.8 287 73.5
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 2.0e-113 412.9 289 75.4
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 4.4e-113 411.8 283 73.5
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 1.7e-112 409.8 287 72.5
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 2.2e-112 409.5 248 82.3
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 5.4e-111 404.8 284 71.8
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 5.4e-111 404.8 282 71.6
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 1.1e-108 397.1 282 69.5
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 1.1e-108 397.1 281 71.2
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.5e-108 396.7 263 74.1
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 1.5e-108 396.7 281 70.5
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 5.6e-108 394.8 425 52.7
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 7.3e-108 394.4 278 71.2
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 1.2e-107 393.7 281 70.8
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 2.1e-107 392.9 347 61.1
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 1.3e-104 383.6 287 67.9
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 1.3e-104 383.6 278 68.3
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 4.9e-104 381.7 248 75.4
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 8.4e-104 380.9 278 68.0
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 2.4e-103 379.4 284 68.3
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 3.0e-101 372.5 300 66.0
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 4.3e-100 368.6 235 77.4
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 1.8e-98 363.2 287 62.4
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 3.1e-98 362.5 287 63.8
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.2e-97 360.5 287 63.1
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 2.0e-97 359.8 287 64.5
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 2.6e-97 359.4 270 66.3
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 9.9e-97 357.5 235 74.9
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 5.1e-93 345.1 323 55.7
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 1.8e-90 336.7 287 62.0
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 7.6e-89 331.3 221 73.8
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 4.9e-88 328.6 196 80.6
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 4.9e-88 328.6 283 58.0
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 8.7e-85 317.8 281 55.9
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 5.6e-84 315.1 283 56.5
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 5.3e-82 308.5 200 75.5
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 7.9e-78 294.7 291 56.7
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 2.3e-77 293.1 243 63.4
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 4.3e-60 235.7 143 83.2
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 1.9e-55 220.3 165 63.6
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 3.0e-53 213.0 271 45.4
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 6.7e-53 211.8 323 42.1
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.6e-49 199.9 181 55.2
Eucgr.L03082 Eucalyptus grandis HOM05D006393 ORTHO05D008088 1.4e-42 177.6 130 66.9
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.2e-41 174.5 181 55.2
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 5.9e-41 172.2 116 77.6
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 1.1e-39 167.9 332 36.1
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 4.1e-34 149.4 160 51.9
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 2.0e-33 147.1 119 67.2
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 3.2e-31 139.8 95 73.7
Eucgr.E03680 Eucalyptus grandis HOM05D006393 ORTHO05D008088 4.7e-30 136.0 95 70.5
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.8e-29 134.0 189 43.4
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 1.5e-23 114.4 161 40.4
vmacro16552 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 1.5e-12 77.8 144 41.0
TAR636G3545 Trochodendron aralioides HOM05D006393 ORTHO05D008088 2.4e-10 70.5 86 48.8
SEGI_30446 Sequoiadendron giganteum HOM05D006393 ORTHO05D000979 1.2e-09 68.2 68 51.5
SEGI_14370 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.3e-08 64.7 58 55.2
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 5.6e-07 59.3 253 28.1
Actinidia20331 Actinidia chinensis HOM05D006393 ORTHO05D008088 1.2e-06 58.2 34 79.4
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.2e-06 58.2 252 27.4
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 1.2e-06 58.2 234 28.2
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 3.6e-06 56.6 253 28.1
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 6.2e-06 55.8 222 27.5
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 6.2e-06 55.8 221 28.1
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 8.0e-06 55.5 253 27.7


User provided reference genes

Program Settings