Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p071469 Quercus lobata HOM05D005629 ORTHO05D008000 7.1e-187 657.1 338 100.0
CiPaw.03G055300 Carya illinoinensis HOM05D005629 ORTHO05D008000 1.4e-158 563.1 340 86.8
Cfa007230 Carpinus fangiana HOM05D005629 ORTHO05D008000 3.1e-158 562.0 339 86.4
Haze_14872 Corylus avellana HOM05D005629 ORTHO05D008000 8.5e-156 553.9 331 87.0
Prupe.3G305800 Prunus persica HOM05D005629 ORTHO05D008000 1.1e-152 543.5 338 82.5
GSVIVG01033097001 Vitis vinifera HOM05D005629 ORTHO05D008000 1.2e-149 533.5 338 82.0
MD09G1011200 Malus domestica HOM05D005629 ORTHO05D008000 1.5e-147 526.6 333 80.5
Dinv33339 Davidia involucrata HOM05D005629 ORTHO05D008000 6.1e-146 521.2 337 82.2
Actinidia36200 Actinidia chinensis HOM05D005629 ORTHO05D008000 8.0e-146 520.8 337 82.2
Hma1.2p1_1278F.1_g272330 Hydrangea macrophylla HOM05D005629 ORTHO05D008000 8.0e-146 520.8 336 80.7
RcHm_v2.0_Chr2g0175511 Rosa chinensis HOM05D005629 ORTHO05D008000 8.0e-146 520.8 339 79.1
FAN09G2642 Fragaria x ananassa HOM05D005629 ORTHO05D008000 4.0e-145 518.5 338 79.0
arahy.Tifrunner.gnm1.ann1.26H0NE Arachis hypogaea HOM05D005629 ORTHO05D008000 1.5e-144 516.5 337 78.6
Atru.chr6.2566 Acer truncatum HOM05D005629 ORTHO05D008000 3.3e-144 515.4 338 79.3
Ciclev10015840m.g Citrus clementina HOM05D005629 ORTHO05D008000 4.4e-144 515.0 339 79.6
FvH4_6g53470 Fragaria vesca HOM05D005629 ORTHO05D008000 4.4e-144 515.0 338 79.0
Gohir.D07G235300 Gossypium hirsutum HOM05D005629 ORTHO05D008000 1.7e-143 513.1 344 78.8
Psat3g164800 Pisum sativum HOM05D005629 ORTHO05D008000 1.7e-143 513.1 333 80.2
CSS0048682 Camellia sinensis var. sinensis HOM05D005629 ORTHO05D004503 8.2e-143 510.8 335 80.0
COL.COLO4_17207 Corchorus olitorius HOM05D005629 ORTHO05D008000 1.1e-142 510.4 342 78.7
CsaV3_3G027030 Cucumis sativus L. HOM05D005629 ORTHO05D008000 1.1e-142 510.4 336 77.1
CANSAT64G1539 Cannabis sativa HOM05D005629 ORTHO05D008000 1.8e-142 509.6 318 82.4
Gorai.001G271100 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.8e-142 509.6 345 78.8
Gohir.A07G228100 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.4e-142 509.2 345 78.8
TWI56G1125 Tripterygium wilfordii HOM05D005629 ORTHO05D008000 7.0e-142 507.7 340 77.4
Actinidia05920 Actinidia chinensis HOM05D005629 ORTHO05D008000 9.1e-142 507.3 337 79.8
Cpa.g.sc171.18 Carica papaya HOM05D005629 ORTHO05D008000 9.1e-142 507.3 341 76.8
ClCG05G013480 Citrullus lanatus HOM05D005629 ORTHO05D008000 9.1e-142 507.3 336 76.5
Migut.F00066 Erythranthe guttata HOM05D005629 ORTHO05D008000 9.1e-142 507.3 338 76.9
Glyma.16G056900 Glycine max HOM05D005629 ORTHO05D008000 1.2e-141 506.9 335 77.9
Thecc.04G035600 Theobroma cacao HOM05D005629 ORTHO05D008000 1.6e-141 506.5 346 77.7
Eucgr.I01649 Eucalyptus grandis HOM05D005629 ORTHO05D008000 2.0e-141 506.1 340 79.4
Ca_26782_v3 Cicer arietinum L. HOM05D005629 ORTHO05D008000 3.5e-141 505.4 340 77.6
Phvul.001G094100 Phaseolus vulgaris HOM05D005629 ORTHO05D008000 1.3e-140 503.4 338 76.0
Lalb_Chr14g0363391 Lupinus albus HOM05D005629 ORTHO05D008000 2.2e-140 502.7 337 77.4
EL10Ac6g15359 Beta vulgaris HOM05D005629 ORTHO05D008000 2.9e-140 502.3 338 75.1
Aqoxy3G01541 Aquilegia oxysepala HOM05D005629 ORTHO05D008000 5.0e-140 501.5 309 81.9
Potri.001G330800 Populus trichocarpa HOM05D005629 ORTHO05D008000 5.0e-140 501.5 351 76.6
PGSC0003DMG400013378 Solanum tuberosum HOM05D005629 ORTHO05D008000 5.0e-140 501.5 295 84.4
HanXRQChr17g0550111 Helianthus annuus HOM05D005629 ORTHO05D008000 1.1e-139 500.4 339 74.6
Lj1g0025061 Lotus japonicus HOM05D005629 ORTHO05D008000 1.9e-139 499.6 341 77.7
BcaC06g33857 Brassica carinata HOM05D005629 ORTHO05D008000 2.5e-139 499.2 343 74.3
Sc03g0006560 Simmondsia chinensis HOM05D005629 ORTHO05D008000 2.5e-139 499.2 340 75.3
AL5G16240 Arabidopsis lyrata HOM05D005629 ORTHO05D008000 3.2e-139 498.8 347 74.1
VMungo1383G2395 Vigna mungo HOM05D005629 ORTHO05D008000 4.2e-139 498.4 338 75.7
Sed0004120 Sechium edule HOM05D005629 ORTHO05D008000 5.5e-139 498.0 335 76.7
Carub.0005s0536 Capsella rubella HOM05D005629 ORTHO05D008000 9.4e-139 497.3 342 74.9
TPR.G38340 Trifolium pratense HOM05D005629 ORTHO05D008000 9.4e-139 497.3 337 77.7
Medtr7g033405 Medicago truncatula HOM05D005629 ORTHO05D008000 1.2e-138 496.9 343 76.7
BcaC06g33860 Brassica carinata HOM05D005629 ORTHO05D008000 1.6e-138 496.5 340 74.1
A06p41480 Brassica napus HOM05D005629 ORTHO05D008000 1.6e-138 496.5 340 74.1
BcaC06g31019 Brassica carinata HOM05D005629 ORTHO05D008000 2.1e-138 496.1 310 79.7
BraA06t27073Z Brassica rapa HOM05D005629 ORTHO05D008000 2.1e-138 496.1 340 74.1
Lju41A52T99 Lonicera japonica HOM05D005629 ORTHO05D008000 2.1e-138 496.1 311 82.6
C07p36170 Brassica napus HOM05D005629 ORTHO05D008000 2.7e-138 495.7 340 74.1
Nitab4.5_0005161g0130 Nicotiana tabacum HOM05D005629 ORTHO05D008000 3.6e-138 495.4 288 85.8
BolC7t44133H Brassica oleracea HOM05D005629 ORTHO05D008000 4.7e-138 495.0 340 73.8
Solyc03g005000.4 Solanum lycopersicum HOM05D005629 ORTHO05D008000 4.7e-138 495.0 295 83.1
Sopen03g001010 Solanum pennellii HOM05D005629 ORTHO05D008000 4.7e-138 495.0 295 83.1
Ah.02g120470 Amaranthus hybridus HOM05D005629 ORTHO05D008000 8.0e-138 494.2 334 74.6
Cc07_g00800 Coffea canephora HOM05D005629 ORTHO05D008000 8.0e-138 494.2 350 75.1
Nitab4.5_0000559g0400 Nicotiana tabacum HOM05D005629 ORTHO05D008000 1.4e-137 493.4 333 78.1
CAN.G1751.5 Capsicum annuum HOM05D005629 ORTHO05D008000 1.8e-137 493.0 292 83.2
Sp2g16240 Schrenkiella parvula HOM05D005629 ORTHO05D008000 1.8e-137 493.0 340 74.1
PSO017G3506 Papaver somniferum HOM05D005629 ORTHO05D008000 3.0e-137 492.3 338 76.9
Peaxi162Scf00700g00023 Petunia axillaris HOM05D005629 ORTHO05D008000 3.0e-137 492.3 325 77.5
PGR142G0641 Punica granatum HOM05D005629 ORTHO05D008000 4.0e-137 491.9 343 75.2
AT3G27110 Arabidopsis thaliana HOM05D005629 ORTHO05D008000 5.2e-137 491.5 347 73.2
Aa31LG2G5490 Aethionema arabicum HOM05D005629 ORTHO05D008000 6.8e-137 491.1 331 75.2
SalBow4G2288 Salvia bowleyana HOM05D005629 ORTHO05D008000 6.8e-137 491.1 330 77.9
ECA246G2396 Erigeron canadensis HOM05D005629 ORTHO05D008000 8.8e-137 490.7 323 76.2
Thhalv10004520m.g Eutrema salsugineum HOM05D005629 ORTHO05D008000 1.2e-136 490.3 345 73.6
Gohir.A11G064500 Gossypium hirsutum HOM05D005629 ORTHO05D008000 2.6e-136 489.2 336 75.3
THA.LOC104825621 Tarenaya hassleriana HOM05D005629 ORTHO05D008000 3.4e-136 488.8 299 80.6
Gohir.D11G068800 Gossypium hirsutum HOM05D005629 ORTHO05D008000 5.7e-136 488.0 336 75.0
SGA_v2.0_scaffold253G45198 Striga asiatica HOM05D005629 ORTHO05D008000 7.5e-136 487.6 340 75.3
DCAR_011309 Daucus carota HOM05D005629 ORTHO05D008000 1.3e-135 486.9 298 82.9
Oeu058781.1 Olea europaea HOM05D005629 ORTHO05D008000 1.3e-135 486.9 338 74.9
Sabra16G0211800 Salix brachista HOM05D005629 ORTHO05D008000 1.3e-135 486.9 321 80.1
Gorai.007G073600 Gossypium raimondii HOM05D005629 ORTHO05D008000 1.4e-134 483.4 337 74.8
ATR0561G239 Amborella trichopoda HOM05D005629 ORTHO05D008000 5.4e-134 481.5 296 80.4
unitig_52.g17654 Utricularia gibba HOM05D005629 ORTHO05D008000 7.2e-131 471.1 299 80.3
Rhsim10G0006600 Rhododendron simsii HOM05D005629 ORTHO05D008000 1.1e-126 457.2 331 73.7
Duzib264G0865 Durio zibethinus HOM05D005629 ORTHO05D008000 4.1e-126 455.3 344 72.1
Os01g0970700 Oryza sativa ssp. japonica HOM05D005629 ORTHO05D008000 2.7e-125 452.6 290 76.2
vmacro05954 Vaccinium macrocarpon HOM05D005629 ORTHO05D008000 2.7e-125 452.6 331 70.7
Zm00001eb127160 Zea mays HOM05D005629 ORTHO05D008000 5.9e-125 451.4 298 75.2
HPP92_024304 Vanilla planifolia HOM05D005629 ORTHO05D008000 2.5e-123 446.0 303 74.3
Migut.H00778 Erythranthe guttata HOM05D005629 ORTHO05D008000 4.3e-123 445.3 261 85.4
HPP92_024293 Vanilla planifolia HOM05D005629 ORTHO05D008000 2.1e-122 443.0 303 73.9
Mapoly0033s0112 Marchantia polymorpha HOM05D005629 ORTHO05D008000 6.8e-121 438.0 285 74.4
Hund04337 Selenicereus undatus HOM05D005629 ORTHO05D008000 2.6e-120 436.0 384 61.5
SEGI_10761 Sequoiadendron giganteum HOM05D005629 ORTHO05D008000 2.6e-120 436.0 270 77.8
Nn4g22342 Nelumbo nucifera HOM05D005629 ORTHO05D008000 8.6e-116 421.0 338 67.2
Migut.K01513 Erythranthe guttata HOM05D005629 ORTHO05D008000 8.3e-111 404.4 272 77.6
Dinv25662 Davidia involucrata HOM05D005629 ORTHO05D000552 1.1e-107 394.0 211 92.9
AUR62003511 Chenopodium quinoa HOM05D005629 ORTHO05D008000 2.5e-107 392.9 248 77.0
Gorai.004G126700 Gossypium raimondii HOM05D005629 ORTHO05D008000 3.1e-105 386.0 236 81.4
Manes.15G160600 Manihot esculenta HOM05D005629 ORTHO05D008000 5.8e-104 381.7 250 79.6
AUR62017822 Chenopodium quinoa HOM05D005629 ORTHO05D008000 1.7e-103 380.2 233 79.0
Gohir.D08G117950 Gossypium hirsutum HOM05D005629 ORTHO05D008000 6.4e-103 378.3 234 80.3
Migut.G01029 Erythranthe guttata HOM05D005629 ORTHO05D008000 9.2e-102 374.4 275 74.2
FAN05G5024 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.6e-100 368.2 250 76.8
FAN02G3075 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.8e-97 360.1 258 74.0
Cre14.g620150 Chlamydomonas reinhardtii HOM05D005629 ORTHO05D008000 1.5e-96 357.1 267 64.0
MELO3C014882.2 Cucumis melo HOM05D005629 ORTHO05D008000 1.5e-96 357.1 252 74.6
MCO03G471 Micromonas commoda HOM05D005629 ORTHO05D008000 2.0e-96 356.7 262 64.9
AagrBONN_evm.TU.Sc2ySwM_117.2248 Anthoceros agrestis HOM05D005629 ORTHO05D008000 6.6e-92 341.7 202 79.7
CARHR148330 Cardamine hirsuta HOM05D005629 ORTHO05D008000 1.2e-90 337.4 253 69.6
FAN14G4117 Fragaria x ananassa HOM05D005629 ORTHO05D008000 6.9e-89 331.6 314 60.8
PRCOL_00001739 Prasinoderma coloniale HOM05D005629 ORTHO05D008000 8.4e-79 298.1 263 55.5
Lsat_1_v5_gn_9_1240 Lactuca sativa HOM05D005629 ORTHO05D008000 1.8e-76 290.4 158 88.0
CDE05G1086 Ceratophyllum demersum HOM05D001132 ORTHO05D002510 3.8e-71 272.7 214 65.4
Zm00001eb202540 Zea mays HOM05D002249 ORTHO05D002443 3.5e-61 239.6 207 59.9
Migut.K01251 Erythranthe guttata HOM05D005629 ORTHO05D008000 1.1e-57 228.0 159 74.8
FvH4_6g53390 Fragaria vesca HOM05D005629 ORTHO05D022663 6.9e-57 225.3 339 44.8
FvH4_6g53350 Fragaria vesca HOM05D005629 ORTHO05D022663 2.3e-52 210.3 336 42.0
Zm00001eb427710 Zea mays HOM05D005629 ORTHO05D003422 2.2e-50 203.8 120 80.0
Zm00001eb174780 Zea mays HOM05D005629 ORTHO05D008000 1.8e-49 200.7 167 61.1
TAR622G1261 Trochodendron aralioides HOM05D005629 ORTHO05D008000 5.3e-49 199.1 117 83.8
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 5.0e-47 192.6 116 80.2
FvH4_6g53420 Fragaria vesca HOM05D005629 ORTHO05D022663 8.5e-47 191.8 223 50.7
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 1.6e-45 187.6 128 71.9
FAN14G1519 Fragaria x ananassa HOM05D005629 ORTHO05D022663 5.9e-40 169.1 340 39.1
CDE02G4678 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 7.4e-35 152.1 242 41.3
FAN02G3684 Fragaria x ananassa HOM05D005629 ORTHO05D008000 5.3e-33 146.0 82 86.6
Lsat_1_v5_gn_0_46360 Lactuca sativa HOM05D005629 ORTHO05D008000 1.4e-28 131.3 124 58.1
arahy.Tifrunner.gnm1.ann1.0H9GWB Arachis hypogaea HOM05D005629 ORTHO05D008000 8.8e-28 128.6 76 81.6
PRCOL_00005410 Prasinoderma coloniale HOM05D005629 ORTHO05D333266 1.5e-27 127.9 271 32.8
MELO3C032122.2 Cucumis melo HOM05D005629 ORTHO05D008000 3.3e-27 126.7 63 92.1
Zm00001eb048250 Zea mays HOM05D005629 ORTHO05D008000 4.1e-25 119.8 73 75.3
AagrBONN_evm.TU.Sc2ySwM_228.873 Anthoceros agrestis HOM05D005629 ORTHO05D008000 2.7e-21 107.1 334 25.7
FAN02G2357 Fragaria x ananassa HOM05D005629 ORTHO05D008000 1.2e-19 101.7 102 52.0
FvH4_6g53460 Fragaria vesca HOM05D005629 ORTHO05D022663 7.0e-17 92.4 186 41.9
A02p35090 Brassica napus HOM05D005629 ORTHO05D008000 3.5e-16 90.1 80 61.2
BraA02t08515Z Brassica rapa HOM05D005629 ORTHO05D008000 3.8e-15 86.7 70 65.7
CAN.G792.7 Capsicum annuum HOM05D002518 ORTHO05D002630 4.4e-11 73.2 45 77.8
Zm00001eb059400 Zea mays HOM05D003056 ORTHO05D003422 2.0e-08 64.3 59 61.0
BolC2t11443H Brassica oleracea HOM05D005629 ORTHO05D008000 5.9e-08 62.8 50 68.0
FvH4_6g53451 Fragaria vesca HOM05D005629 ORTHO05D196308 3.8e-07 60.1 74 47.3
FvH4_6g53450 Fragaria vesca HOM05D005629 ORTHO05D008000 4.3e-06 56.6 104 39.4


User provided reference genes

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