Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.2e-124 449.9 244 100.0
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.3e-102 375.9 245 81.2
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 6.2e-100 367.9 247 83.0
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.7e-97 359.8 247 80.6
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 4.9e-97 358.2 244 77.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.4e-96 356.7 246 73.2
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 3.5e-95 352.1 246 76.4
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 6.0e-95 351.3 246 74.8
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 7.9e-95 350.9 244 74.6
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.3e-94 350.1 244 72.1
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 6.7e-94 347.8 245 75.1
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.9e-93 346.3 239 77.0
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 4.3e-93 345.1 247 71.7
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 1.3e-92 343.6 244 70.9
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 2.8e-92 342.4 245 73.9
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 3.7e-92 342.0 247 70.9
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.8e-92 341.7 246 72.8
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.4e-91 340.1 240 71.7
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.4e-91 340.1 244 71.7
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 1.8e-91 339.7 245 76.7
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 4.0e-91 338.6 248 71.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.9e-91 337.8 244 72.1
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.5e-90 336.7 246 72.8
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-90 336.7 240 70.4
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 3.4e-90 335.5 247 70.9
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 4.5e-90 335.1 246 76.8
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 5.8e-90 334.7 251 74.1
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 7.6e-90 334.3 246 68.7
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-89 333.6 256 67.6
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.2e-89 332.8 246 71.5
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 2.9e-89 332.4 247 70.4
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 2.9e-89 332.4 248 72.2
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 2.9e-89 332.4 244 71.3
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.1e-88 330.5 248 72.2
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.1e-88 330.5 248 68.1
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.9e-88 329.7 245 69.0
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.9e-88 329.7 246 69.9
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.5e-88 328.2 246 70.3
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.1e-87 326.2 248 71.8
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.1e-87 326.2 246 69.9
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.7e-87 325.9 245 68.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 2.7e-87 325.9 247 75.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 3.5e-87 325.5 244 68.9
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 7.9e-87 324.3 248 68.1
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 2.3e-86 322.8 249 72.3
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.1e-86 321.6 244 76.6
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 6.7e-86 321.2 248 73.0
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-85 320.1 246 69.1
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-85 319.7 244 75.0
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.9e-85 319.7 249 71.9
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 3.3e-85 318.9 250 68.8
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 3.3e-85 318.9 244 65.6
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 7.4e-85 317.8 246 67.9
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 7.4e-85 317.8 249 69.5
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.3e-84 317.0 248 73.4
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.8e-84 315.8 245 70.2
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 4.8e-84 315.1 244 70.1
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.3e-84 314.7 244 75.8
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.8e-83 313.2 247 66.8
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 4.1e-83 312.0 246 68.7
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 6.9e-83 311.2 244 73.8
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 6.9e-83 311.2 243 70.8
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 9.0e-83 310.8 249 66.3
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.4e-82 308.9 247 70.0
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 5.9e-82 308.1 239 66.1
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.0e-81 307.4 244 71.7
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.7e-81 306.6 297 59.9
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.2e-81 306.2 250 66.0
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 3.8e-81 305.4 239 66.5
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 5.0e-81 305.1 247 71.3
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 5.0e-81 305.1 246 70.7
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.1e-80 303.9 244 67.6
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.4e-80 303.5 249 65.1
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.9e-80 303.1 265 60.8
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 9.4e-80 300.8 248 71.0
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 1.2e-79 300.4 249 68.7
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-79 300.1 239 66.5
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.6e-79 300.1 248 67.7
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.1e-79 299.7 239 66.5
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 2.1e-79 299.7 244 68.9
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 2.7e-79 299.3 239 70.7
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.4e-78 297.0 245 71.0
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.8e-78 296.6 244 63.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 3.0e-78 295.8 261 62.1
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.1e-77 293.9 245 68.2
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.5e-77 292.7 244 68.9
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 4.3e-77 292.0 244 69.3
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 5.7e-77 291.6 245 68.6
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 5.7e-77 291.6 249 69.1
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 1.7e-76 290.0 240 69.6
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.7e-76 290.0 249 67.9
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 1.7e-76 290.0 244 68.9
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 6.3e-76 288.1 244 68.0
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 8.2e-76 287.7 246 65.9
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.4e-75 287.0 239 66.5
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.4e-74 282.3 248 60.5
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.7e-73 280.0 243 64.2
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 3.8e-73 278.9 245 60.8
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 6.5e-73 278.1 244 63.5
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.1e-72 277.3 246 64.6
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.4e-72 276.9 246 61.8
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 7.2e-72 274.6 245 60.0
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.6e-71 273.5 246 62.6
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 3.0e-70 269.2 252 63.5
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 3.9e-70 268.9 185 76.8
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.9e-70 268.9 238 58.4
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.6e-69 266.2 240 61.2
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 2.6e-69 266.2 205 70.2
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 3.3e-69 265.8 247 58.3
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 9.7e-69 264.2 248 62.5
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 9.7e-69 264.2 250 55.6
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.7e-68 263.5 241 65.6
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.2e-68 263.1 246 58.1
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 2.8e-68 262.7 246 61.0
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.7e-68 262.3 228 64.0
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 8.2e-68 261.2 246 58.5
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.4e-67 259.6 241 58.5
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 7.0e-67 258.1 249 57.4
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 7.0e-67 258.1 240 54.6
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 9.1e-67 257.7 238 57.6
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.5e-66 256.9 245 54.7
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 2.0e-66 256.5 244 56.1
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 4.5e-66 255.4 245 57.1
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 4.5e-66 255.4 245 57.1
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.3e-65 253.8 244 57.8
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.2e-65 253.1 240 61.2
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 2.9e-65 252.7 240 57.1
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 6.5e-65 251.5 250 52.4
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 6.5e-65 251.5 249 59.4
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 8.5e-65 251.1 249 57.0
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 8.5e-65 251.1 250 52.4
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.5e-64 249.6 205 72.2
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 4.2e-64 248.8 251 61.8
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 5.5e-64 248.4 240 57.1
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.2e-63 247.3 246 55.7
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.1e-63 246.5 240 62.1
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 2.7e-63 246.1 241 58.5
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 3.6e-63 245.7 248 59.3
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 4.7e-63 245.4 246 58.5
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 6.1e-63 245.0 239 56.9
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 4.4e-61 238.8 246 57.3
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.4e-61 238.8 244 55.7
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.4e-59 233.8 251 56.2
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.8e-59 233.4 243 55.1
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.1e-59 232.6 208 62.5
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.5e-56 223.8 248 55.2
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.2e-56 222.2 144 76.4
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.1e-55 218.4 300 51.3
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 1.7e-49 200.3 244 42.2
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.1e-48 197.6 240 42.5
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 5.5e-48 195.3 243 51.0
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 1.5e-45 187.2 240 44.6
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 4.4e-45 185.7 240 41.2
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 4.8e-44 182.2 155 65.8
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.9e-42 175.3 111 76.6
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.6e-41 171.4 108 76.9
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 2.0e-37 160.2 119 73.1
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 8.0e-31 138.3 84 81.0
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.0e-30 137.9 171 45.0
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.1e-30 136.3 82 78.0
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.6e-29 133.3 146 47.3
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 2.2e-28 130.2 111 62.2
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.4e-27 127.5 175 42.9
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 8.6e-25 118.2 151 45.7
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.1e-24 117.9 77 74.0
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.3e-24 115.2 88 65.9
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 5.4e-19 99.0 66 68.2
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 1.6e-15 87.4 75 81.3
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.6e-15 87.4 56 67.9
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 2.9e-12 76.6 48 72.9
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.6e-10 70.9 43 81.4
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 6.0e-10 68.9 111 32.4
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 1.1e-08 64.7 103 39.8
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 3.1e-06 56.6 107 30.8


User provided reference genes

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