Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 1.1e-201 706.4 362 100.0
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 1.0e-199 699.9 362 99.4
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 3.0e-127 459.1 372 68.3
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 1.8e-124 449.9 373 66.5
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.2e-123 447.2 288 78.1
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.6e-123 446.8 290 78.3
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 2.0e-123 446.4 367 66.2
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 2.0e-123 446.4 375 66.1
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 5.9e-123 444.9 368 66.8
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 3.9e-122 442.2 281 78.6
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 3.9e-122 442.2 355 66.5
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 2.5e-121 439.5 369 65.6
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.3e-121 438.7 368 64.4
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 1.2e-120 437.2 361 67.0
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 1.6e-120 436.8 278 77.3
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 3.6e-120 435.6 361 65.9
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 4.7e-120 435.3 280 77.1
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 6.2e-120 434.9 273 77.7
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 6.2e-120 434.9 358 65.1
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 8.0e-120 434.5 273 77.7
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 1.4e-119 433.7 280 76.4
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.4e-119 433.7 289 76.1
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 2.3e-119 433.0 271 79.3
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 3.1e-119 432.6 335 68.7
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 1.5e-118 430.3 362 64.6
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 1.5e-118 430.3 270 78.5
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 2.9e-117 426.0 367 63.8
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 6.4e-117 424.9 278 74.8
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 8.3e-117 424.5 288 72.9
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 8.3e-117 424.5 278 74.8
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 1.1e-116 424.1 278 76.3
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 1.4e-116 423.7 288 72.9
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.9e-116 423.3 278 76.3
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 7.0e-116 421.4 344 63.7
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 1.6e-115 420.2 364 62.6
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.6e-115 420.2 288 75.0
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 7.8e-115 417.9 264 78.0
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 3.0e-114 416.0 288 74.3
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.9e-113 413.3 259 77.6
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 2.5e-113 412.9 284 72.2
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 2.8e-112 409.5 371 62.5
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 4.7e-112 408.7 285 71.2
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 8.1e-112 407.9 359 63.0
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 3.1e-111 406.0 355 62.5
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 5.2e-111 405.2 276 74.3
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 6.8e-111 404.8 286 69.9
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 1.5e-110 403.7 249 79.1
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 2.6e-110 402.9 357 62.5
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 2.6e-110 402.9 361 62.0
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 3.4e-110 402.5 276 71.4
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 4.4e-110 402.1 266 73.3
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 7.5e-110 401.4 291 69.1
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 1.7e-109 400.2 350 62.0
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 3.7e-109 399.1 265 74.7
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 6.4e-109 398.3 366 59.6
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 8.3e-109 397.9 271 72.7
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 1.1e-108 397.5 357 61.9
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.4e-108 397.1 278 73.0
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 1.4e-108 397.1 276 72.1
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 1.9e-108 396.7 360 60.8
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 1.9e-108 396.7 270 71.9
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 2.4e-108 396.4 280 72.9
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 2.4e-108 396.4 276 73.6
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 4.1e-108 395.6 263 72.6
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 9.2e-108 394.4 267 73.4
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 9.2e-108 394.4 344 62.8
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 2.1e-107 393.3 364 59.9
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 1.3e-106 390.6 332 63.0
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.7e-106 390.2 276 68.1
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 2.3e-106 389.8 276 70.7
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 5.1e-106 388.7 362 59.9
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 6.6e-106 388.3 341 62.5
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 2.5e-105 386.3 354 60.2
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 2.5e-105 386.3 362 59.4
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 4.3e-105 385.6 373 58.4
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 4.7e-104 382.1 278 70.1
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.1e-103 380.9 362 59.1
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.4e-103 380.6 361 60.7
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 2.3e-103 379.8 308 64.3
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 2.3e-103 379.8 358 61.2
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 6.8e-103 378.3 263 71.1
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 9.9e-102 374.4 374 57.8
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 1.3e-101 374.0 262 71.4
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 3.2e-100 369.4 376 56.4
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.3e-98 363.2 375 53.6
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 8.1e-96 354.8 337 59.1
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 2.4e-95 353.2 276 64.1
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 2.1e-88 330.1 271 65.3
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 8.4e-85 318.2 285 57.5
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 7.9e-83 311.6 324 55.2
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 2.9e-77 293.1 234 61.1
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 6.0e-75 285.4 275 58.2
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.9e-73 280.4 254 54.3
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.3e-73 279.6 364 48.4
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 9.0e-71 271.6 243 53.5
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 4.9e-69 265.8 240 54.6
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 7.9e-67 258.5 377 47.2
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 7.4e-65 251.9 176 72.2
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.2e-62 244.6 250 56.8
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 5.9e-62 242.3 250 56.4
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 2.9e-61 240.0 198 61.6
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 3.8e-61 239.6 238 49.2
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 3.0e-58 229.9 242 48.3
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.7e-57 225.7 183 63.9
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 7.2e-52 208.8 114 83.3
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 2.8e-48 196.8 237 51.9
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 2.6e-46 190.3 249 36.5
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 2.2e-45 187.2 156 55.8
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.1e-44 184.9 120 77.5
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 1.2e-43 181.4 235 41.3
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.6e-38 164.5 219 40.2
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 1.5e-36 157.9 128 71.1
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 4.8e-32 142.9 235 45.1
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 1.4e-31 141.4 210 47.6
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 2.9e-29 133.7 136 58.1
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 4.2e-28 129.8 146 54.1
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.0e-26 125.2 74 83.8
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.7e-24 116.7 105 60.0
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 6.5e-21 105.9 71 78.9
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 9.2e-15 85.5 201 30.8
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 1.5e-12 78.2 105 43.8
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.5e-09 68.2 141 30.5
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 7.5e-09 65.9 141 29.8
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 1.3e-08 65.1 141 29.8
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 1.3e-08 65.1 140 30.0
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 3.7e-08 63.5 132 30.3
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 3.7e-08 63.5 141 29.1
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 6.4e-08 62.8 145 30.3
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 8.3e-08 62.4 160 30.0
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 8.3e-08 62.4 160 27.5
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 1.1e-07 62.0 151 33.8
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 1.9e-07 61.2 141 29.1
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 1.9e-07 61.2 145 29.7
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 2.4e-07 60.8 140 30.7
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 5.4e-07 59.7 141 29.8
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 5.4e-07 59.7 142 29.6
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 5.4e-07 59.7 142 31.0
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 5.4e-07 59.7 142 31.0
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 5.4e-07 59.7 234 23.9
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 9.2e-07 58.9 160 25.6
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 9.2e-07 58.9 193 28.5
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 1.6e-06 58.2 149 33.6
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.6e-06 58.2 140 29.3
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 1.6e-06 58.2 152 26.3
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 1.6e-06 58.2 141 24.8
Sopen11g005640 Solanum pennellii HOM05D007191 ORTHO05D009370 1.6e-06 58.2 151 32.5
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 2.7e-06 57.4 191 25.1
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 2.7e-06 57.4 151 31.8
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 4.6e-06 56.6 193 28.5
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 6.0e-06 56.2 151 30.5


User provided reference genes

Program Settings