Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 3.0e-41 171.4 85 100.0
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 9.0e-30 133.3 83 74.7
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.3e-28 129.4 83 72.3
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.4e-28 126.7 83 71.1
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 3.2e-27 124.8 82 74.4
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 7.9e-26 120.2 83 68.7
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 7.9e-26 120.2 85 65.9
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 3.9e-25 117.9 75 70.7
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 5.1e-25 117.5 83 67.5
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 6.7e-25 117.1 75 70.7
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 8.7e-25 116.7 82 65.9
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.1e-24 116.3 81 67.9
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 1.5e-24 115.9 76 65.8
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 4.3e-24 114.4 69 75.4
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 5.6e-24 114.0 80 62.5
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 5.6e-24 114.0 76 69.7
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 7.4e-24 113.6 90 62.2
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 9.6e-24 113.2 80 66.2
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 9.6e-24 113.2 78 67.9
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 1.3e-23 112.8 73 74.0
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.3e-23 112.8 68 76.5
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.1e-23 112.1 85 64.7
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 2.1e-23 112.1 75 62.7
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 2.1e-23 112.1 79 65.8
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 2.8e-23 111.7 68 75.0
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 2.8e-23 111.7 69 73.9
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.8e-23 110.9 76 68.4
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 4.8e-23 110.9 76 68.4
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.8e-23 110.9 71 73.2
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 1.4e-22 109.4 70 74.3
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 1.8e-22 109.0 81 63.0
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.4e-22 108.6 76 67.1
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.0e-22 107.8 81 61.7
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 4.0e-22 107.8 78 67.9
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.3e-22 107.5 81 61.7
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.3e-22 107.5 81 61.7
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 5.3e-22 107.5 83 61.4
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 6.9e-22 107.1 81 61.7
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.2e-21 106.3 69 71.0
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 1.5e-21 105.9 68 70.6
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 2.6e-21 105.1 69 71.0
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 2.6e-21 105.1 76 61.8
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 3.4e-21 104.8 67 70.1
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 4.5e-21 104.4 68 70.6
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 4.5e-21 104.4 70 65.7
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 5.8e-21 104.0 68 72.1
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 7.6e-21 103.6 72 65.3
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.3e-20 102.8 71 67.6
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 1.3e-20 102.8 78 62.8
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.7e-20 102.4 83 57.8
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.2e-20 102.1 70 65.7
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.2e-20 102.1 83 56.6
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.9e-20 101.7 87 56.3
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 2.9e-20 101.7 69 65.2
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 3.8e-20 101.3 67 62.7
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 3.8e-20 101.3 68 60.3
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 3.8e-20 101.3 68 60.3
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 3.8e-20 101.3 68 60.3
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 3.8e-20 101.3 81 58.0
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 3.8e-20 101.3 73 64.4
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 4.9e-20 100.9 68 61.8
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 4.9e-20 100.9 78 61.5
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 4.9e-20 100.9 78 61.5
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.9e-20 100.9 78 61.5
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.9e-20 100.9 78 61.5
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 4.9e-20 100.9 80 60.0
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 4.9e-20 100.9 68 60.3
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 6.5e-20 100.5 66 62.1
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 6.5e-20 100.5 66 62.1
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 6.5e-20 100.5 66 62.1
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 6.5e-20 100.5 78 61.5
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 8.4e-20 100.1 73 63.0
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 1.1e-19 99.8 66 62.1
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 1.1e-19 99.8 85 60.0
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-19 99.8 72 63.9
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.4e-19 99.4 72 65.3
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 1.4e-19 99.4 83 54.2
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.9e-19 99.0 65 61.5
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.9e-19 99.0 73 64.4
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 2.5e-19 98.6 72 62.5
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 4.2e-19 97.8 69 63.8
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 4.2e-19 97.8 69 55.1
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 4.2e-19 97.8 66 60.6
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.2e-19 97.8 81 54.3
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.2e-19 97.8 81 54.3
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 4.2e-19 97.8 81 54.3
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 5.5e-19 97.4 68 58.8
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 9.3e-19 96.7 76 56.6
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 1.2e-18 96.3 65 60.0
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.2e-18 96.3 81 55.6
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.6e-18 95.9 68 57.4
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.6e-18 95.9 67 65.7
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 2.1e-18 95.5 68 54.4
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 2.1e-18 95.5 67 67.2
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.5e-18 94.7 68 61.8
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 3.5e-18 94.7 78 59.0
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 4.6e-18 94.4 83 53.0
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.6e-18 94.4 67 65.7
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 6.0e-18 94.0 81 51.9
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 7.9e-18 93.6 75 57.3
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 7.9e-18 93.6 81 53.1
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 7.9e-18 93.6 78 55.1
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 1.0e-17 93.2 78 53.8
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 2.3e-17 92.0 72 61.1
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 3.0e-17 91.7 81 58.0
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 3.9e-17 91.3 76 55.3
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 5.1e-17 90.9 68 60.3
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 6.7e-17 90.5 63 65.1
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 5.7e-16 87.4 69 59.4
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 5.7e-16 87.4 69 59.4
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 7.4e-16 87.0 83 51.8
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.3e-15 86.3 83 50.6
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.6e-15 85.9 68 55.9
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 2.8e-15 85.1 83 49.4
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 6.3e-15 84.0 83 49.4
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 1.8e-14 82.4 70 52.9
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 6.9e-14 80.5 76 48.7
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 9.0e-14 80.1 53 69.8
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 8.5e-12 73.6 53 67.9
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.1e-11 73.2 56 60.7
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 2.5e-11 72.0 59 59.3
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 3.2e-11 71.6 45 73.3
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 3.2e-11 71.6 57 61.4
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 9.4e-11 70.1 74 50.0
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 6.1e-10 67.4 62 53.2
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.9e-08 62.4 55 60.0
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.5e-08 62.0 58 56.9
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 3.3e-08 61.6 39 71.8
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 5.7e-08 60.8 51 56.9
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 3.7e-07 58.2 58 51.7


User provided reference genes

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