Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 4.0e-232 807.7 417 100.0
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 8.5e-166 587.4 387 78.0
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 8.3e-161 570.9 399 72.7
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 4.5e-159 565.1 409 72.6
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 7.5e-146 521.2 403 65.8
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 7.0e-144 514.6 403 65.3
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 6.0e-143 511.5 403 66.0
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.3e-142 510.4 371 70.1
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 1.7e-142 510.0 375 68.0
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 3.0e-142 509.2 389 65.6
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 3.0e-142 509.2 389 65.6
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 3.9e-142 508.8 390 66.7
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 4.3e-141 505.4 376 68.1
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 7.3e-141 504.6 376 67.0
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 8.1e-140 501.1 396 68.9
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 4.0e-139 498.8 385 67.3
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 6.8e-139 498.0 401 63.6
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 8.9e-139 497.7 393 65.4
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 3.4e-138 495.7 421 62.2
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 1.4e-136 490.3 394 62.7
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.4e-136 490.3 385 64.4
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.0e-134 484.2 399 62.4
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.7e-134 483.4 397 64.0
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.7e-134 483.4 387 64.1
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.5e-133 480.3 395 63.5
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.9e-133 479.9 372 64.2
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.1e-132 476.5 389 62.2
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 6.2e-132 474.9 409 61.4
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 6.2e-132 474.9 387 62.5
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 8.1e-132 474.6 378 63.5
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 3.1e-131 472.6 382 63.9
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 6.8e-131 471.5 401 61.1
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 8.9e-131 471.1 404 60.4
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.2e-130 470.7 406 60.3
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.2e-130 470.7 379 64.4
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 5.8e-130 468.4 395 59.0
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 5.8e-130 468.4 401 60.1
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 7.6e-130 468.0 401 60.1
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.2e-129 466.5 267 82.0
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 3.8e-129 465.7 398 60.8
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.6e-127 460.3 329 74.8
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.6e-127 460.3 383 61.6
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 4.6e-127 458.8 387 60.7
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 6.0e-127 458.4 405 60.2
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 3.9e-126 455.7 366 64.8
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 6.6e-126 454.9 362 63.0
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 8.6e-126 454.5 396 60.9
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.3e-125 452.2 346 65.9
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 7.3e-125 451.4 371 61.5
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 9.6e-125 451.1 399 56.4
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 8.1e-124 448.0 392 61.5
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 2.4e-123 446.4 379 58.8
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 2.2e-121 439.9 367 62.9
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.4e-120 437.2 404 55.9
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 4.6e-119 432.2 399 56.9
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 1.0e-118 431.0 396 61.6
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 2.3e-118 429.9 295 68.5
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 3.0e-118 429.5 414 56.0
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 8.7e-118 427.9 415 55.9
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.1e-117 427.6 406 56.9
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 7.3e-117 424.9 394 58.4
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 1.3e-116 424.1 367 61.0
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 2.1e-116 423.3 438 53.0
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 4.8e-116 422.2 407 57.0
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.8e-115 420.2 358 61.2
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 4.0e-115 419.1 402 54.5
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.2e-114 417.5 384 54.7
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 3.4e-114 416.0 358 58.1
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 4.9e-113 412.1 366 59.8
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 1.1e-112 411.0 395 54.7
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.3e-110 404.1 392 55.4
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.9e-109 400.2 461 51.0
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 3.3e-109 399.4 346 62.1
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 9.6e-109 397.9 412 51.5
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 6.2e-108 395.2 402 53.2
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 6.2e-108 395.2 385 54.3
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 3.1e-107 392.9 408 52.5
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 1.2e-106 391.0 413 50.4
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.5e-106 390.6 408 51.2
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.5e-106 390.6 411 50.9
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 2.6e-106 389.8 405 51.9
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 3.4e-106 389.4 410 51.2
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 9.9e-106 387.9 414 51.2
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.1e-104 384.4 409 51.6
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.4e-104 384.0 362 57.2
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 2.4e-104 383.3 400 51.5
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.1e-103 380.2 415 49.9
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 7.9e-103 378.3 354 54.0
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.3e-102 376.7 378 55.0
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 3.9e-102 375.9 252 71.8
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 8.7e-102 374.8 297 63.6
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.3e-100 370.9 400 50.2
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.8e-99 367.1 300 64.0
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 6.9e-99 365.2 398 48.0
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.0e-97 361.3 362 53.9
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 3.8e-97 359.4 373 48.8
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 8.4e-97 358.2 408 50.2
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 7.1e-96 355.1 378 51.1
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 4.6e-95 352.4 231 68.0
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 6.7e-94 348.6 394 47.5
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.5e-93 347.4 401 48.9
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 4.3e-93 345.9 365 47.9
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 3.7e-92 342.8 367 51.2
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 2.0e-90 337.0 369 52.6
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 7.2e-88 328.6 399 46.4
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.6e-87 325.9 370 48.6
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.9e-85 320.5 259 57.5
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 4.3e-85 319.3 393 46.1
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 4.8e-84 315.8 274 55.1
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 6.3e-84 315.5 276 55.1
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 7.9e-79 298.5 311 47.3
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.4e-78 297.7 363 46.8
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.4e-78 297.7 370 43.8
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.8e-78 297.4 309 49.2
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 9.7e-77 291.6 180 73.9
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 7.7e-74 282.0 198 65.7
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 3.2e-72 276.6 278 55.4
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 2.6e-66 256.9 178 68.5
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 4.5e-66 256.1 247 58.3
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 6.1e-63 245.7 317 39.7
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.3e-61 240.0 179 59.8
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 2.0e-53 214.2 140 70.7
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 6.1e-47 192.6 227 47.1
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 8.9e-46 188.7 240 49.2
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 3.4e-45 186.8 232 52.6
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 2.1e-39 167.5 95 73.7
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 6.1e-39 166.0 97 72.2
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 5.2e-38 162.9 94 74.5
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 1.3e-36 158.3 112 67.0
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.1e-32 145.2 121 55.4
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 2.2e-28 131.0 108 56.5
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 1.9e-27 127.9 101 69.3
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.4e-27 127.5 101 56.4
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 3.2e-27 127.1 85 67.1
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.7e-25 121.3 100 53.0
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 3.9e-25 120.2 172 50.6
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.2e-23 115.2 89 62.9
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.4e-21 107.1 77 64.9
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 2.2e-20 104.4 85 48.2
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 6.4e-12 76.3 138 47.8
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 3.2e-11 73.9 42 81.0
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 6.0e-10 69.7 140 42.9
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 2.3e-09 67.8 143 41.3
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 1.5e-08 65.1 43 67.4


User provided reference genes

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