Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 2006.5 1011 100.0
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1731.8 1014 85.7
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1723.0 1076 81.7
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1716.0 1011 84.8
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1628.6 1011 78.9
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1615.9 1011 78.3
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1595.5 983 79.9
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1592.8 1010 78.1
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1588.5 1012 78.4
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1588.2 1012 77.1
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1585.9 1012 78.0
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1584.3 1010 77.0
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1575.5 1016 77.0
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1569.7 1010 76.4
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1569.7 1013 76.7
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1568.1 1014 77.5
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1562.0 994 77.2
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1558.5 994 77.2
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1537.3 1011 75.9
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1532.3 1012 75.0
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1532.3 1012 75.9
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1529.2 1010 73.8
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1518.1 1012 74.4
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1516.1 1013 74.7
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1516.1 987 75.7
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1507.7 1016 73.7
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1504.2 1018 74.1
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1499.6 1013 74.6
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1491.5 1001 74.0
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1486.9 1013 74.1
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1484.9 1018 73.4
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1475.3 1075 69.5
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1472.6 1014 72.1
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1469.5 1014 72.1
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1466.4 1012 71.3
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1464.5 1012 71.2
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1460.7 1062 69.9
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1459.9 1012 71.8
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1459.5 1014 71.3
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1456.0 1013 71.4
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1453.3 1008 71.7
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1446.8 1012 71.1
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1440.2 1014 70.8
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1435.6 1033 70.4
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1428.3 1014 70.0
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1420.6 1014 69.7
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1410.6 999 69.6
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1390.9 1013 69.0
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1380.9 1012 67.5
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1372.8 1014 67.6
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1367.4 1020 67.2
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1365.9 1017 67.8
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1364.0 1017 67.2
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1363.2 1014 67.6
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1362.4 1015 66.6
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1362.4 1010 68.2
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1357.0 1011 66.2
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1355.9 1017 66.7
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1353.6 1017 65.9
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1346.3 1014 66.4
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1335.9 1015 65.7
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1334.3 1016 65.5
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1331.6 1011 65.9
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1331.2 1011 65.7
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1330.5 1014 65.9
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1330.5 1013 66.6
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1329.7 1014 65.7
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1327.8 1014 65.7
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1325.1 1014 65.4
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1325.1 1014 65.4
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1319.7 1013 64.8
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1318.5 1014 66.2
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1316.2 1011 66.5
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1309.3 1024 64.1
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1301.2 776 81.8
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1300.0 1018 65.1
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1298.5 1006 65.7
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1296.6 1007 65.2
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1285.0 1011 63.7
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1243.0 775 79.4
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1234.6 1011 62.3
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1211.8 984 63.1
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1182.5 796 73.2
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 0.0e+00 1163.3 1016 59.3
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 0.0e+00 1125.2 1017 57.3
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 0.0e+00 1120.5 1020 56.6
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 8.1e-303 1043.9 692 73.7
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 1.3e-295 1020.0 753 67.1
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 2.1e-290 1002.7 594 81.5
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 3.5e-290 1001.9 610 79.0
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 4.8e-287 991.5 974 54.6
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 6.1e-266 921.4 1031 48.4
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-261 906.7 1033 48.0
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 8.5e-260 901.0 774 57.8
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 6.1e-250 868.2 876 51.0
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.3e-247 860.5 1005 48.4
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 3.5e-237 825.9 1007 47.4
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 3.6e-218 762.7 549 69.4
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 4.1e-214 749.2 504 71.4
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 1.6e-213 747.3 544 68.2
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 7.3e-211 738.4 453 81.5
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 3.9e-204 716.1 432 80.6
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 2.7e-189 666.8 1058 39.3
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 2.3e-188 663.7 431 77.0
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.1e-185 654.8 1033 39.0
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 8.9e-185 651.7 572 59.8
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.4e-184 649.4 528 63.4
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 2.6e-176 623.6 512 60.9
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 9.0e-169 598.6 459 62.7
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.3e-162 578.2 512 58.2
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 1.4e-158 564.7 1019 34.7
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 8.5e-151 538.9 629 47.7
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.0e-131 474.6 426 58.9
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 9.7e-123 445.7 531 46.5
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 1.3e-119 435.3 1103 30.0
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.8e-119 433.7 296 69.9
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.6e-117 427.2 237 86.5
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 9.1e-113 412.5 266 78.2
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 2.2e-106 391.3 237 81.4
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.0e-84 317.4 315 52.7
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 1.2e-83 315.8 334 50.9
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 8.3e-82 309.7 316 52.2
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.1e-81 309.3 458 42.6
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 2.1e-61 241.9 434 38.5
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 2.9e-58 231.5 419 37.0
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 3.2e-57 228.0 363 41.0
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 2.9e-50 204.9 109 89.0
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 1.4e-49 202.6 163 65.0
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 1.4e-49 202.6 163 65.0
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 7.4e-46 190.3 752 27.1
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 2.8e-45 188.3 819 26.4
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 8.2e-45 186.8 402 35.8
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 7.6e-43 180.3 398 34.9
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 1.7e-42 179.1 751 25.8
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 3.8e-42 177.9 245 43.7
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 4.2e-41 174.5 434 30.9
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-39 169.1 317 37.9
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 1.6e-32 146.0 114 67.5
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 2.1e-32 145.6 161 49.1
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 3.0e-31 141.7 191 44.0
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 9.7e-30 136.7 122 62.3
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 5.3e-28 131.0 76 82.9
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 1.0e-26 126.7 154 44.2
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 2.7e-24 118.6 76 72.4
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 2.2e-21 109.0 164 38.4
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-20 106.7 436 23.6
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 2.6e-19 102.1 89 55.1
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.3e-18 99.8 77 67.5
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-18 99.8 195 35.9
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 7.4e-14 84.0 51 74.5
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 1.3e-13 83.2 46 84.8
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 1.1e-12 80.1 96 42.7
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.6e-11 76.3 49 69.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.0e-10 73.6 69 56.5
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 8.0e-08 63.9 102 43.1
PSO782G3231 Papaver somniferum HOM05D023650 ORTHO05D026023 3.0e-07 62.0 60 46.7


User provided reference genes

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