Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.9e-234 815.5 401 100.0
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.9e-223 778.9 401 93.8
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 3.3e-223 778.1 401 93.8
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 3.3e-223 778.1 401 94.0
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 6.2e-222 773.9 401 92.3
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 8.1e-222 773.5 401 93.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.1e-221 771.5 401 93.0
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.0e-221 771.2 401 92.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 5.2e-221 770.8 401 92.0
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 6.8e-221 770.4 401 91.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.6e-220 768.5 401 91.3
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 3.4e-220 768.1 401 92.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 3.4e-220 768.1 401 91.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.4e-220 768.1 401 91.3
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 3.4e-220 768.1 401 91.5
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 4.4e-220 767.7 401 91.8
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 9.9e-220 766.5 401 91.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 1.3e-219 766.1 401 91.8
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-219 765.8 401 91.8
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-219 765.8 401 91.8
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.9e-219 765.0 401 91.3
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.9e-219 765.0 401 91.0
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 3.8e-219 764.6 401 91.5
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 4.9e-219 764.2 401 91.0
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 6.4e-219 763.8 401 91.0
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 8.4e-219 763.5 401 91.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 3.2e-218 761.5 401 91.3
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 4.2e-218 761.1 401 91.3
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 5.4e-218 760.8 401 90.8
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 7.1e-218 760.4 401 90.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.1e-218 760.4 401 90.8
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 7.1e-218 760.4 401 90.8
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.1e-217 758.8 401 91.5
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 2.7e-217 758.4 401 91.3
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 3.5e-217 758.1 401 90.5
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 3.5e-217 758.1 401 90.5
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 4.6e-217 757.7 401 89.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 6.0e-217 757.3 401 90.8
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 7.8e-217 756.9 401 90.3
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 7.8e-217 756.9 401 90.0
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.3e-216 756.1 401 90.0
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 2.3e-216 755.4 401 89.3
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 3.0e-216 755.0 401 90.0
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 3.0e-216 755.0 401 89.5
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 3.9e-216 754.6 401 90.3
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 3.9e-216 754.6 410 89.3
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 5.1e-216 754.2 401 89.8
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 5.1e-216 754.2 401 90.0
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.6e-216 753.8 401 89.5
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.6e-216 753.8 401 89.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 8.7e-216 753.4 401 90.0
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.1e-215 753.1 401 89.5
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.5e-215 752.7 401 89.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.9e-215 752.3 401 89.8
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.5e-215 751.9 401 90.8
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.3e-215 751.5 401 89.5
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.3e-215 751.5 401 90.0
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 5.6e-215 750.7 401 89.8
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 5.6e-215 750.7 401 89.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 5.6e-215 750.7 401 90.0
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.3e-214 749.6 416 87.5
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.6e-214 749.2 401 89.0
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.6e-214 749.2 401 89.0
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 2.1e-214 748.8 401 88.8
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.8e-214 748.4 401 89.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 3.6e-214 748.0 401 89.8
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 3.6e-214 748.0 401 89.8
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 4.8e-214 747.7 401 89.8
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 4.8e-214 747.7 401 89.0
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 6.2e-214 747.3 401 89.5
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 6.2e-214 747.3 401 88.8
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.1e-213 746.5 401 89.5
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 3.1e-213 745.0 401 89.8
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 4.0e-213 744.6 401 88.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 6.9e-213 743.8 401 89.3
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 9.0e-213 743.4 401 89.3
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 1.5e-212 742.7 415 86.3
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 2.0e-212 742.3 401 89.5
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 4.4e-212 741.1 415 86.0
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.7e-211 739.2 401 87.8
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 2.2e-211 738.8 401 87.8
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.2e-211 738.8 401 87.5
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 2.2e-211 738.8 401 88.0
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 3.8e-211 738.0 401 88.3
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 3.8e-211 738.0 401 88.3
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 3.8e-211 738.0 401 88.3
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 4.9e-211 737.6 401 88.0
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 4.9e-211 737.6 401 88.0
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 4.9e-211 737.6 401 88.0
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 4.9e-211 737.6 401 88.5
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 4.9e-211 737.6 428 83.9
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 3.2e-210 734.9 401 88.0
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 3.2e-210 734.9 401 88.0
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 3.2e-210 734.9 401 88.0
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 4.2e-210 734.6 401 86.8
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 7.1e-210 733.8 401 87.8
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 7.1e-210 733.8 401 87.8
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 9.3e-210 733.4 401 87.0
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.2e-209 733.0 401 87.8
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 1.6e-209 732.6 401 87.5
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 4.6e-209 731.1 401 86.8
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 7.9e-209 730.3 401 87.0
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.3e-208 729.6 401 86.8
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.3e-208 729.6 401 87.5
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 3.0e-208 728.4 401 86.5
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.9e-208 728.0 437 82.2
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.9e-207 725.7 400 87.5
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.9e-207 725.7 401 86.0
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 2.5e-207 725.3 395 86.3
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 3.3e-207 724.9 401 88.3
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 7.3e-207 723.8 401 85.5
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 9.6e-207 723.4 440 81.6
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 2.8e-206 721.8 418 85.9
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 4.8e-206 721.1 401 86.5
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 7.6e-204 713.8 400 84.8
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 9.9e-204 713.4 401 84.0
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 1.4e-202 709.5 401 85.8
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.1e-201 705.7 401 85.0
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.0e-200 703.4 401 84.5
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 9.6e-199 696.8 401 84.5
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 8.1e-198 693.7 374 88.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 2.0e-196 689.1 401 82.5
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 4.2e-194 681.4 401 81.3
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.9e-192 674.9 401 81.0
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 3.9e-192 674.9 401 81.0
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.1e-191 673.3 357 89.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 3.4e-188 661.8 360 87.2
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 6.5e-187 657.5 360 88.3
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 3.3e-183 645.2 401 79.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 4.2e-178 628.2 400 74.0
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.0e-176 623.6 333 90.1
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 1.5e-175 619.8 339 87.6
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 9.7e-175 617.1 401 72.3
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 4.8e-174 614.8 401 72.3
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.2e-171 605.9 401 76.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 3.8e-171 605.1 401 70.8
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.5e-171 604.0 402 70.9
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.2e-170 602.1 402 70.9
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.6e-164 582.4 401 69.3
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 9.4e-162 573.9 400 67.2
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 6.3e-158 561.2 402 67.2
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 2.2e-155 552.7 289 92.4
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 5.0e-147 525.0 402 68.9
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 6.5e-147 524.6 418 66.0
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.3e-139 500.4 401 65.3
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 1.6e-129 466.8 258 86.4
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 5.6e-122 441.8 394 54.8
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 1.9e-114 416.8 295 71.5
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.3e-114 416.0 395 53.2
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 9.6e-106 387.9 229 82.5
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 2.4e-101 373.2 219 82.2
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 4.2e-101 372.5 219 81.7
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 9.3e-101 371.3 219 80.8
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.7e-84 316.6 299 55.5
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.5e-82 310.1 167 89.2
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 6.9e-80 302.0 159 89.9
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 1.7e-54 217.6 119 87.4
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.4e-32 144.8 86 80.2
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 4.1e-32 143.3 351 27.4
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 7.7e-31 139.0 351 28.8
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 5.7e-18 96.3 47 93.6
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 1.3e-14 85.1 45 80.0
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 9.5e-13 79.0 72 58.3
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-11 73.9 316 23.4


User provided reference genes

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