Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 5.2e-128 461.1 233 100.0
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 2.4e-72 276.2 205 72.7
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.1e-64 250.8 240 62.5
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 1.1e-56 224.2 244 53.3
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 7.6e-55 218.0 233 59.2
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 1.4e-53 213.8 245 54.3
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 4.0e-48 195.7 227 52.4
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 5.8e-47 191.8 227 52.9
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 2.3e-43 179.9 116 74.1
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 5.1e-43 178.7 252 46.4
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 1.5e-42 177.2 240 46.2
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.9e-42 176.8 257 44.4
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.4e-40 170.6 247 44.9
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 1.4e-40 170.6 196 51.5
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 4.5e-39 165.6 239 46.4
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 1.3e-38 164.1 238 46.6
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 2.2e-38 163.3 242 46.7
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 6.5e-38 161.8 237 46.4
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 7.2e-37 158.3 238 39.9
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 1.2e-36 157.5 258 45.7
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 2.1e-36 156.8 238 42.0
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 2.1e-36 156.8 240 45.0
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 4.6e-36 155.6 239 44.4
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.8e-35 153.7 241 41.1
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 3.0e-35 152.9 230 41.7
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 5.1e-35 152.1 116 61.2
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 5.1e-35 152.1 247 40.1
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 8.7e-35 151.4 253 43.9
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 1.9e-34 150.2 147 59.2
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 4.3e-34 149.1 249 40.2
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 1.7e-33 147.1 259 40.5
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 2.8e-33 146.4 243 42.8
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 4.8e-33 145.6 238 41.6
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 9.1e-32 141.4 234 41.0
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 1.5e-31 140.6 237 39.2
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 5.9e-31 138.7 187 42.8
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 7.7e-31 138.3 237 43.5
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 7.7e-31 138.3 232 43.5
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.0e-30 137.9 119 57.1
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.3e-30 137.5 119 57.1
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 2.2e-30 136.7 86 75.6
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 3.8e-30 136.0 235 38.7
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 2.1e-28 130.2 216 43.1
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 4.7e-28 129.0 244 40.6
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 2.3e-27 126.7 244 41.4
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 1.2e-23 114.4 197 38.6
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 4.5e-23 112.5 99 53.5
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 3.8e-22 109.4 199 40.2
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 2.3e-19 100.1 91 54.9
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 2.0e-18 97.1 239 33.5
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 3.1e-16 89.7 80 48.8
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 1.2e-15 87.8 95 48.4
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 8.0e-12 75.1 96 41.7
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 8.0e-12 75.1 77 46.8
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 4.0e-11 72.8 80 42.5
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.0e-11 72.8 109 34.9
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 8.8e-11 71.6 90 37.8
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 1.5e-10 70.9 96 34.4
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.5e-10 70.9 108 33.3
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 2.0e-10 70.5 89 40.4
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 4.4e-10 69.3 106 34.9
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 4.4e-10 69.3 109 32.1
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 5.7e-10 68.9 107 36.4
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 5.7e-10 68.9 149 30.2
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 5.7e-10 68.9 101 38.6
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 7.5e-10 68.6 106 35.8
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 7.5e-10 68.6 87 37.9
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 9.7e-10 68.2 84 40.5
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 9.7e-10 68.2 108 35.2
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 1.3e-09 67.8 126 34.1
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.3e-09 67.8 86 39.5
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.7e-09 67.4 146 32.2
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 2.2e-09 67.0 89 36.0
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 2.2e-09 67.0 150 30.7
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.2e-09 67.0 77 41.6
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 2.8e-09 66.6 96 34.4
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 3.7e-09 66.2 130 34.6
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.8e-09 65.9 81 40.7
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 4.8e-09 65.9 84 39.3
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 4.8e-09 65.9 84 39.3
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 4.8e-09 65.9 119 35.3
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 6.3e-09 65.5 84 39.3
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 6.3e-09 65.5 207 30.0
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 6.3e-09 65.5 124 34.7
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 6.3e-09 65.5 127 31.5
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 6.3e-09 65.5 138 34.1
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 8.2e-09 65.1 103 38.8
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 8.2e-09 65.1 84 36.9
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 8.2e-09 65.1 87 39.1
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 8.2e-09 65.1 114 31.6
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 8.2e-09 65.1 141 29.8
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.1e-08 64.7 100 38.0
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 1.4e-08 64.3 126 34.1
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.4e-08 64.3 118 33.1
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.4e-08 64.3 77 40.3
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.8e-08 63.9 99 36.4
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.8e-08 63.9 112 34.8
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.8e-08 63.9 112 34.8
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 1.8e-08 63.9 91 35.2
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.8e-08 63.9 115 34.8
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.8e-08 63.9 59 45.8
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 1.8e-08 63.9 71 43.7
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 1.8e-08 63.9 126 33.3
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.8e-08 63.9 64 45.3
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.4e-08 63.5 56 48.2
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.4e-08 63.5 124 37.1
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.4e-08 63.5 103 35.0
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.4e-08 63.5 126 34.1
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 3.1e-08 63.2 119 30.3
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 3.1e-08 63.2 88 36.4
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 3.1e-08 63.2 98 33.7
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 3.1e-08 63.2 108 35.2
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 4.1e-08 62.8 113 32.7
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 4.1e-08 62.8 116 35.3
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 4.1e-08 62.8 56 46.4
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 5.3e-08 62.4 154 31.2
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 5.3e-08 62.4 203 29.6
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 5.3e-08 62.4 99 34.3
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.0e-08 62.0 69 43.5
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.0e-08 62.0 96 36.5
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 7.0e-08 62.0 96 40.6
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 7.0e-08 62.0 75 41.3
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 7.0e-08 62.0 75 41.3
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 7.0e-08 62.0 88 37.5
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 9.1e-08 61.6 105 33.3
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 9.1e-08 61.6 176 29.5
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 9.1e-08 61.6 139 30.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.2e-07 61.2 119 29.4
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 1.2e-07 61.2 106 34.9
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.2e-07 61.2 124 32.3
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 1.6e-07 60.8 129 34.9
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 1.6e-07 60.8 124 32.3
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 2.0e-07 60.5 159 27.7
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 2.0e-07 60.5 159 27.7
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 2.0e-07 60.5 159 27.7
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 2.0e-07 60.5 113 32.7
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 2.0e-07 60.5 88 42.0
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 2.0e-07 60.5 59 47.5
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 2.0e-07 60.5 124 31.5
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.7e-07 60.1 156 30.1
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.7e-07 60.1 187 31.6
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.7e-07 60.1 119 33.6
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.7e-07 60.1 119 32.8
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 2.7e-07 60.1 176 29.0
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.7e-07 60.1 138 31.9
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.7e-07 60.1 126 34.1
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 3.5e-07 59.7 151 31.1
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 5.9e-07 58.9 78 39.7
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 5.9e-07 58.9 168 25.6
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.7e-07 58.5 132 33.3
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 7.7e-07 58.5 155 31.0
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 1.0e-06 58.2 146 26.0
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.0e-06 58.2 190 29.5
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.0e-06 58.2 126 31.0
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.3e-06 57.8 176 22.7
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.3e-06 57.8 136 27.9
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.3e-06 57.8 190 30.0
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 1.3e-06 57.8 128 28.9
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 1.7e-06 57.4 186 27.4
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.7e-06 57.4 158 29.7
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 1.7e-06 57.4 51 47.1
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 2.2e-06 57.0 175 26.9
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 2.9e-06 56.6 165 30.9
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.9e-06 56.6 59 45.8
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.9e-06 56.6 73 39.7
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 3.8e-06 56.2 128 29.7
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 5.0e-06 55.8 190 28.4
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 6.5e-06 55.5 186 26.9
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 6.5e-06 55.5 61 39.3


User provided reference genes

Program Settings