Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 3.3e-259 897.9 468 100.0
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 2.0e-240 835.5 471 91.7
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.4e-236 822.8 468 89.7
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 4.2e-222 774.6 470 86.4
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 2.1e-221 772.3 470 87.2
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 1.5e-219 766.1 470 85.7
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 4.4e-219 764.6 474 84.8
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.8e-218 761.9 468 85.0
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 9.8e-211 736.9 472 81.6
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 1.7e-207 726.1 449 84.0
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.8e-204 716.1 422 89.8
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 4.9e-202 708.0 470 79.1
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 4.6e-200 701.4 472 78.0
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 7.8e-200 700.7 468 76.9
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 2.3e-199 699.1 470 77.0
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 3.0e-199 698.7 456 80.5
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 6.6e-199 697.6 471 77.3
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 5.6e-198 694.5 470 78.3
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 7.3e-198 694.1 441 81.4
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 9.5e-198 693.7 471 76.9
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 2.1e-197 692.6 441 81.0
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 3.6e-197 691.8 456 79.8
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 4.7e-197 691.4 469 77.8
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 8.0e-197 690.6 471 77.3
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.1e-196 690.3 482 76.3
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 2.6e-195 685.6 468 77.4
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 4.4e-195 684.9 441 79.1
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 8.3e-194 680.6 451 78.5
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.9e-193 679.5 472 75.8
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 3.2e-193 678.7 465 77.2
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 5.4e-193 677.9 471 74.1
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.6e-192 676.4 471 75.6
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.8e-192 674.1 441 78.9
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.0e-191 673.7 441 77.8
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.3e-191 672.5 442 79.6
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 2.3e-191 672.5 445 77.8
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 3.9e-191 671.8 447 76.1
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 3.3e-190 668.7 438 78.8
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 3.3e-190 668.7 470 74.3
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 4.3e-190 668.3 454 77.3
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 4.3e-190 668.3 450 77.3
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 9.5e-190 667.2 449 77.3
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 2.1e-189 666.0 471 74.7
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 2.1e-189 666.0 441 78.2
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 2.8e-189 665.6 441 78.5
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.1e-188 663.7 441 78.0
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.4e-188 663.3 470 74.3
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.8e-188 662.9 470 74.0
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.8e-188 662.9 471 73.7
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 3.1e-188 662.1 470 74.5
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 8.9e-188 660.6 469 74.0
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.2e-187 660.2 470 74.7
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 2.0e-187 659.4 509 71.7
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 5.8e-187 657.9 470 74.7
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 7.5e-187 657.5 447 76.5
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 9.9e-187 657.1 444 77.3
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 2.9e-186 655.6 432 78.7
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.9e-186 654.8 427 78.9
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 6.4e-186 654.4 472 72.9
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 8.3e-186 654.1 449 74.4
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.4e-185 653.3 472 72.7
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 5.4e-185 651.4 468 72.4
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 5.4e-185 651.4 472 72.2
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 1.2e-184 650.2 465 72.9
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 3.5e-184 648.7 423 82.0
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 3.5e-184 648.7 468 72.6
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 6.0e-184 647.9 471 72.8
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 6.0e-184 647.9 469 72.5
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.0e-183 647.1 468 72.2
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 2.3e-183 646.0 468 72.2
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 3.0e-183 645.6 466 72.1
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 5.1e-183 644.8 464 72.8
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 6.6e-183 644.4 449 74.6
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 1.1e-182 643.7 450 73.8
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 1.5e-182 643.3 469 72.5
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.5e-182 642.5 440 74.5
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 4.3e-182 641.7 472 71.8
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 5.6e-182 641.3 464 72.6
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 9.5e-182 640.6 464 72.6
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 1.2e-181 640.2 449 74.6
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 2.8e-181 639.0 463 72.4
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 3.6e-181 638.6 428 77.6
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.8e-180 636.3 468 72.0
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 4.0e-180 635.2 471 72.2
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.2e-179 633.6 468 71.8
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 6.4e-178 627.9 489 69.1
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 8.4e-178 627.5 478 69.5
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.4e-177 626.7 490 68.8
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 4.2e-177 625.2 443 73.6
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 9.2e-177 624.0 399 81.7
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.3e-175 619.4 409 78.5
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 2.1e-173 612.8 464 69.2
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.4e-172 610.1 438 73.1
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 1.4e-172 610.1 457 70.5
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.6e-171 605.9 406 77.1
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 5.8e-171 604.7 517 64.6
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 2.1e-168 596.3 422 71.8
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 8.7e-167 590.9 414 76.3
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.3e-165 587.0 412 75.5
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 1.5e-163 580.1 425 69.6
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 2.1e-157 559.7 457 64.6
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 7.6e-155 551.2 409 71.4
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.7e-154 550.1 423 67.8
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.9e-153 546.6 393 74.8
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 3.5e-152 542.3 385 70.9
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 1.1e-142 510.8 325 84.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.4e-137 493.8 345 77.4
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.6e-136 489.2 478 59.4
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.8e-135 486.9 450 58.4
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.2e-128 464.2 360 66.9
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 1.6e-128 463.8 432 62.7
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 3.3e-126 456.1 434 59.2
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.9e-121 440.3 329 68.7
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 5.7e-118 428.7 434 55.5
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.2e-105 385.2 253 79.8
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 4.0e-103 379.4 388 57.0
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.0e-83 312.4 241 70.1
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 6.2e-80 302.4 246 67.1
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 5.8e-78 295.8 202 75.7
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.3e-77 294.7 195 76.9
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.2e-70 271.6 204 69.6
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 2.9e-69 266.9 147 89.8
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 2.7e-67 260.4 218 61.0
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.2e-59 235.0 182 71.4
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 5.1e-50 203.0 469 34.5
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.6e-48 198.0 125 76.0
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.1e-35 154.5 137 63.5
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.1e-35 154.5 137 63.5
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.6e-32 144.8 141 58.9
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 8.2e-32 142.5 102 70.6
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 9.0e-31 139.0 263 37.6
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.0e-29 135.6 158 55.1
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 6.5e-29 132.9 101 71.3
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 5.5e-28 129.8 263 35.7
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.2e-27 128.6 127 56.7
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 5.7e-25 119.8 76 77.6
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 3.9e-18 97.1 120 51.7
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 2.0e-17 94.7 87 56.3
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.3e-13 82.0 46 73.9
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.3e-13 82.0 46 73.9
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 2.9e-13 80.9 76 56.6
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.8e-13 80.5 74 55.4
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 5.0e-13 80.1 74 55.4
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 2.5e-12 77.8 64 64.1
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 2.5e-12 77.8 88 53.4
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 2.7e-11 74.3 137 38.7
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 3.6e-11 73.9 116 42.2
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 3.6e-11 73.9 80 52.5
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 3.6e-11 73.9 108 44.4
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 3.6e-11 73.9 166 33.1
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 4.7e-11 73.6 64 59.4
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 4.7e-11 73.6 64 59.4
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 4.7e-11 73.6 64 59.4
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 6.1e-11 73.2 59 54.2
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 6.1e-11 73.2 63 60.3
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 7.9e-11 72.8 64 59.4
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 1.4e-10 72.0 130 39.2
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.4e-10 72.0 130 39.2
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.4e-10 72.0 130 39.2
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 2.3e-10 71.2 130 38.5
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.1e-09 68.9 178 29.8
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 5.7e-09 66.6 76 47.4
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.8e-08 64.3 132 37.9
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 1.8e-07 61.6 45 68.9
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 1.8e-07 61.6 57 59.6
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 3.1e-07 60.8 48 68.8
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 3.5e-06 57.4 39 69.2
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 5.9e-06 56.6 60 56.7
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 7.7e-06 56.2 33 75.8


User provided reference genes

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