Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat5g022880 Pisum sativum HOM05D019765 ORTHO05D003537 1.0e-140 503.4 262 100.0
Psat0s4490g0080 Pisum sativum HOM05D019765 ORTHO05D323772 2.3e-44 183.3 91 95.6
Psat5g282680 Pisum sativum HOM05D019765 ORTHO05D321673 6.8e-44 181.8 91 93.4
Psat0s4490g0120 Pisum sativum HOM05D019765 ORTHO05D324526 1.8e-36 157.1 91 82.4
Psat5g282720 Pisum sativum HOM05D019765 ORTHO05D329978 5.2e-36 155.6 91 82.4
Psat2g167280 Pisum sativum HOM05D019765 ORTHO05D330388 3.7e-34 149.4 91 80.2
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 1.8e-20 104.0 56 87.5
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.8e-20 104.0 56 87.5
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.8e-20 104.0 56 87.5
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 1.8e-20 104.0 56 87.5
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 5.2e-20 102.4 56 85.7
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 4.4e-19 99.4 111 51.4
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 7.6e-19 98.6 56 80.4
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 1.7e-18 97.4 56 82.1
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.2e-18 97.1 56 80.4
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 2.2e-18 97.1 56 80.4
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 2.2e-18 97.1 56 80.4
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 2.9e-18 96.7 56 82.1
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 2.9e-18 96.7 56 80.4
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 3.8e-18 96.3 56 82.1
COL.COLO4_15050 Corchorus olitorius HOM05D002263 ORTHO05D003537 3.8e-18 96.3 56 78.6
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 3.8e-18 96.3 56 80.4
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 3.8e-18 96.3 56 80.4
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 3.8e-18 96.3 56 80.4
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 3.8e-18 96.3 56 78.6
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 3.8e-18 96.3 56 80.4
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 3.8e-18 96.3 56 80.4
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 4.9e-18 95.9 56 78.6
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.9e-18 95.9 56 78.6
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.9e-18 95.9 56 78.6
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.9e-18 95.9 56 78.6
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.9e-18 95.9 56 78.6
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 6.4e-18 95.5 56 78.6
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 6.4e-18 95.5 56 78.6
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 6.4e-18 95.5 56 80.4
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 6.4e-18 95.5 56 78.6
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 6.4e-18 95.5 56 78.6
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 6.4e-18 95.5 56 78.6
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 6.4e-18 95.5 56 78.6
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 6.4e-18 95.5 56 78.6
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 8.4e-18 95.1 56 78.6
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 8.4e-18 95.1 56 76.8
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 8.4e-18 95.1 56 78.6
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 8.4e-18 95.1 56 80.4
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 8.4e-18 95.1 56 78.6
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 8.4e-18 95.1 56 76.8
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 8.4e-18 95.1 56 78.6
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 8.4e-18 95.1 56 78.6
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 1.1e-17 94.7 56 76.8
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.1e-17 94.7 56 78.6
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.1e-17 94.7 56 76.8
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 1.1e-17 94.7 56 76.8
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.1e-17 94.7 56 78.6
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 1.4e-17 94.4 56 78.6
Hma1.2p1_2160F.1_g315570 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.4e-17 94.4 56 76.8
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 1.4e-17 94.4 56 78.6
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.4e-17 94.4 56 78.6
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.9e-17 94.0 56 75.0
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 1.9e-17 94.0 56 75.0
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 1.9e-17 94.0 56 78.6
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 2.4e-17 93.6 56 76.8
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 2.4e-17 93.6 56 76.8
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 2.4e-17 93.6 56 76.8
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 2.4e-17 93.6 56 73.2
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 3.2e-17 93.2 56 76.8
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 3.2e-17 93.2 56 73.2
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 3.2e-17 93.2 56 73.2
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 3.2e-17 93.2 56 75.0
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 4.2e-17 92.8 56 75.0
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 4.2e-17 92.8 82 58.5
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.2e-17 92.8 56 78.6
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 76.8
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 75.0
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 75.0
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 73.2
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 75.0
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 75.0
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 76.8
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 76.8
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 75.0
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 75.0
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 5.4e-17 92.4 56 75.0
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 7.1e-17 92.0 56 73.2
TWI09G0750 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 7.1e-17 92.0 56 80.4
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 9.3e-17 91.7 80 55.0
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 9.3e-17 91.7 56 76.8
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 9.3e-17 91.7 56 73.2
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 9.3e-17 91.7 56 69.6
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 9.3e-17 91.7 56 75.0
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.2e-16 91.3 56 75.0
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.2e-16 91.3 56 75.0
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 1.2e-16 91.3 56 76.8
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 1.2e-16 91.3 56 76.8
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 1.6e-16 90.9 56 73.2
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 1.6e-16 90.9 56 76.8
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 2.1e-16 90.5 56 75.0
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.7e-16 90.1 56 71.4
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 3.5e-16 89.7 56 71.4
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 3.5e-16 89.7 56 73.2
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 3.5e-16 89.7 56 75.0
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 4.6e-16 89.4 56 75.0
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 4.6e-16 89.4 56 71.4
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 4.6e-16 89.4 56 73.2
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 6.0e-16 89.0 56 75.0
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 7.8e-16 88.6 56 75.0
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 7.8e-16 88.6 80 53.8
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 7.8e-16 88.6 56 69.6
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 1.3e-15 87.8 56 73.2
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 1.3e-15 87.8 56 73.2
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 1.3e-15 87.8 56 73.2
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 1.3e-15 87.8 56 73.2
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.3e-15 87.8 56 73.2
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 1.3e-15 87.8 56 73.2
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.3e-15 87.8 56 69.6
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 1.7e-15 87.4 56 73.2
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 1.7e-15 87.4 56 71.4
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 1.7e-15 87.4 56 67.9
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 1.7e-15 87.4 56 67.9
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 2.3e-15 87.0 58 69.0
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 2.3e-15 87.0 56 71.4
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 3.0e-15 86.7 56 69.6
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 3.0e-15 86.7 56 71.4
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 3.0e-15 86.7 56 71.4
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 3.9e-15 86.3 56 71.4
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 5.1e-15 85.9 72 55.6
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 5.1e-15 85.9 56 67.9
SEGI_32368 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 5.1e-15 85.9 80 53.8
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 6.6e-15 85.5 56 71.4
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 6.6e-15 85.5 56 71.4
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 6.6e-15 85.5 56 69.6
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 6.6e-15 85.5 56 69.6
SEGI_10251 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 6.6e-15 85.5 80 52.5
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 8.7e-15 85.1 56 67.9
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.1e-14 84.7 56 66.1
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.1e-14 84.7 56 71.4
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 1.5e-14 84.3 56 66.1
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 5.6e-14 82.4 56 66.1
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 5.6e-14 82.4 56 67.9
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 7.3e-14 82.0 56 69.6
AL8G14170 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 9.6e-14 81.6 51 74.5
AL8G27570 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 9.6e-14 81.6 51 74.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.1e-13 80.5 56 64.3
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 2.1e-13 80.5 52 75.0
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.8e-13 80.1 56 67.9
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 3.6e-13 79.7 50 72.0
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 4.8e-13 79.3 56 62.5
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 4.8e-13 79.3 56 62.5
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 1.1e-12 78.2 57 64.9
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 4.0e-12 76.3 55 58.2
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 4.0e-12 76.3 55 60.0
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 7.1e-09 65.5 57 50.9
vmacro08887 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 9.3e-09 65.1 46 65.2
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.2e-08 64.7 50 56.0
Os01g0234200 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 3.5e-08 63.2 56 57.1
Psat0s7098g0040 Pisum sativum HOM05D000062 ORTHO05D000043 1.3e-07 61.2 32 87.5
Sc11g0009090 Simmondsia chinensis HOM05D002263 ORTHO05D003537 3.0e-07 60.1 48 64.6
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 5.1e-07 59.3 45 60.0
Psat0s797g0200 Pisum sativum HOM05D002263 ORTHO05D003537 6.6e-07 58.9 47 68.1
Rhsim09G0080900 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.5e-06 57.8 82 43.9
Psat0s2398g0120 Pisum sativum HOM05D002263 ORTHO05D003537 9.6e-06 55.1 32 81.2


User provided reference genes

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