Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 5.2e-131 471.1 241 100.0
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 4.0e-123 444.9 241 94.2
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 7.5e-122 440.7 241 92.5
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 1.3e-121 439.9 241 92.9
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 8.5e-118 427.2 241 88.4
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 9.8e-114 413.7 238 86.1
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.1e-112 408.3 222 93.7
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 4.1e-112 408.3 241 85.5
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 5.4e-112 407.9 241 85.1
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 9.2e-112 407.1 241 86.3
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.6e-111 406.4 240 85.0
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 5.9e-111 404.4 241 83.8
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 7.7e-111 404.1 241 84.2
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.3e-110 403.3 241 83.8
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.9e-110 402.1 240 84.2
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.6e-108 396.4 237 83.5
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 4.4e-106 388.3 235 84.3
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 2.2e-105 386.0 236 81.4
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 2.2e-105 386.0 240 80.8
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 3.7e-105 385.2 241 78.4
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.1e-104 383.6 241 80.1
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 2.4e-104 382.5 237 81.4
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.0e-103 379.4 236 81.4
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.7e-103 379.0 236 78.4
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.7e-103 379.0 236 78.4
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 4.6e-103 378.3 241 79.3
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 4.6e-103 378.3 241 77.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 7.8e-103 377.5 241 77.6
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.3e-102 376.7 241 78.4
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.7e-102 376.3 241 77.2
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 1.7e-102 376.3 236 78.8
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 3.9e-102 375.2 238 77.7
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 8.6e-102 374.0 240 80.4
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.5e-101 373.2 241 77.2
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 2.5e-101 372.5 236 77.5
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.5e-101 372.5 241 77.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 2.5e-101 372.5 241 77.2
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 3.3e-101 372.1 241 75.9
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 3.3e-101 372.1 236 77.5
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 4.3e-101 371.7 238 75.6
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 5.6e-101 371.3 241 76.3
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 7.3e-101 370.9 241 77.2
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.6e-100 369.8 235 77.4
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.6e-100 369.8 212 86.8
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.6e-100 369.8 228 79.8
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 2.1e-100 369.4 237 75.9
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 4.7e-100 368.2 237 77.6
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.0e-99 367.1 238 76.5
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.0e-99 367.1 240 75.8
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.0e-99 367.1 241 74.7
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 2.3e-99 365.9 241 76.3
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 3.1e-99 365.5 241 75.5
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 3.1e-99 365.5 241 76.3
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 6.8e-99 364.4 238 75.2
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.8e-99 364.4 241 74.3
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 8.9e-99 364.0 228 78.9
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.2e-98 363.6 227 79.3
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.2e-98 363.6 260 71.2
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.4e-98 362.1 228 78.5
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 9.8e-98 360.5 241 75.5
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 9.8e-98 360.5 231 77.5
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 9.8e-98 360.5 249 75.1
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 1.3e-97 360.1 242 76.0
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.3e-97 360.1 238 75.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.7e-97 359.8 234 77.8
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 4.9e-97 358.2 229 76.4
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.4e-97 357.8 241 73.4
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 8.3e-97 357.5 237 75.5
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 2.4e-96 355.9 238 73.5
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.2e-96 355.5 229 75.5
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 4.1e-96 355.1 236 74.2
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.1e-96 355.1 227 77.5
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 5.4e-96 354.8 241 75.5
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.2e-95 353.6 241 74.7
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.6e-95 353.2 238 73.5
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.6e-95 353.2 238 73.5
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.6e-95 353.2 238 73.5
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.0e-95 352.8 227 76.7
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 2.0e-95 352.8 232 75.4
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 2.7e-95 352.4 274 67.9
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.5e-95 352.1 238 72.3
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 3.5e-95 352.1 228 77.2
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 6.0e-95 351.3 337 58.5
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 5.0e-94 348.2 238 73.1
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 8.6e-94 347.4 241 73.4
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.1e-93 347.1 266 68.4
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 4.3e-93 345.1 233 72.5
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 9.5e-93 344.0 213 80.8
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.2e-92 343.6 238 74.4
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.6e-92 343.2 238 72.3
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 1.6e-92 343.2 208 82.2
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 2.8e-92 342.4 238 71.4
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 3.6e-92 342.0 241 72.6
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 8.9e-91 337.4 227 73.1
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.2e-90 337.0 238 67.6
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.2e-90 337.0 210 79.0
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.0e-90 336.3 283 62.9
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.0e-90 336.3 283 63.6
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 1.1e-88 330.5 202 80.2
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.3e-86 323.6 199 80.4
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 2.3e-86 322.8 213 73.7
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 7.3e-85 317.8 239 69.5
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.8e-83 313.2 205 75.1
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.4e-82 308.9 199 76.4
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 4.1e-80 302.0 238 68.1
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 5.4e-80 301.6 188 77.7
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 5.1e-78 295.0 238 64.3
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 8.1e-76 287.7 171 82.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 3.4e-74 282.3 230 62.2
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 6.4e-73 278.1 230 59.6
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 5.4e-72 275.0 176 76.1
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.2e-71 273.9 167 77.2
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.9e-69 266.5 228 57.5
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.7e-62 243.4 146 80.1
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.5e-61 240.4 145 79.3
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 4.5e-58 228.8 195 57.4
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 2.4e-56 223.0 135 82.2
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.4e-56 223.0 141 79.4
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.4e-56 223.0 141 79.4
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.3e-54 217.2 123 87.0
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 8.7e-54 214.5 182 64.3
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 4.3e-53 212.2 120 90.0
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 3.4e-50 202.6 121 83.5
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.4e-48 197.2 117 86.3
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.9e-48 196.8 224 45.1
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 1.9e-48 196.8 170 61.2
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 3.2e-48 196.1 131 71.8
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 3.5e-47 192.6 117 83.8
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 7.9e-47 191.4 127 74.8
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.6e-44 183.7 129 78.3
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 2.6e-42 176.4 234 44.0
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 1.9e-37 160.2 121 68.6
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 1.7e-33 147.1 133 57.9
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.6e-31 140.6 101 72.3
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.1e-29 134.4 178 44.4
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.6e-29 133.3 111 64.0
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 7.4e-29 131.7 85 71.8
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.3e-28 131.0 81 80.2
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.8e-28 129.8 100 74.0
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.5e-26 124.0 106 63.2
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.5e-26 124.0 89 69.7
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.5e-26 124.0 152 42.1
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 2.9e-25 119.8 243 34.6
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.0e-22 111.3 91 59.3
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 5.2e-22 109.0 72 77.8
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 2.0e-21 107.1 183 34.4
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.9e-18 95.5 75 70.7
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.7e-17 94.0 51 86.3
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.6e-15 87.4 53 75.5
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 3.3e-13 79.7 163 36.8
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 8.5e-09 65.1 32 87.5
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 3.6e-07 59.7 33 75.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 3.6e-07 59.7 30 90.0


User provided reference genes

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