Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 4.9e-235 817.4 402 100.0
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 89.6
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 88.1
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 7.4e-199 697.2 402 84.3
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 9.3e-194 680.2 402 81.8
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 2.1e-193 679.1 402 81.3
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.3e-192 676.4 402 80.8
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.3e-192 676.4 402 81.3
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.3e-192 676.4 395 83.0
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 2.3e-192 675.6 402 82.1
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 3.0e-192 675.2 402 81.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 3.9e-192 674.9 402 81.1
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 3.9e-192 674.9 402 81.3
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 8.7e-192 673.7 402 80.6
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 8.7e-192 673.7 401 81.0
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 1.1e-191 673.3 402 81.1
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 1.5e-191 672.9 402 80.8
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.9e-191 672.5 402 80.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.9e-191 672.5 402 80.3
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.9e-191 672.5 402 80.3
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.9e-191 672.5 402 81.1
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 2.5e-191 672.2 402 81.1
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 3.3e-191 671.8 402 81.6
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 80.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 9.7e-191 670.2 402 80.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 2.2e-190 669.1 402 80.1
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.2e-190 669.1 402 80.6
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 2.8e-190 668.7 402 79.6
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.8e-190 668.7 402 80.6
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 2.8e-190 668.7 402 80.3
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.7e-190 668.3 402 80.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 3.7e-190 668.3 402 80.8
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 4.8e-190 667.9 402 80.3
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 4.8e-190 667.9 402 80.1
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 6.3e-190 667.5 402 81.1
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.3e-190 667.5 402 80.6
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 6.3e-190 667.5 402 79.9
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 6.3e-190 667.5 402 80.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 8.2e-190 667.2 402 80.1
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 8.2e-190 667.2 402 80.6
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 8.2e-190 667.2 402 80.3
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.4e-189 666.4 402 80.1
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.4e-189 666.4 402 79.9
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 1.8e-189 666.0 402 79.6
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 1.8e-189 666.0 402 79.6
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.8e-189 666.0 402 80.1
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 79.9
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 79.9
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 79.4
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 80.1
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 79.6
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 4.1e-189 664.8 402 80.6
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.1e-189 664.8 402 79.9
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.1e-189 664.8 402 79.9
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.1e-189 664.8 402 79.9
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 4.1e-189 664.8 402 79.4
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 5.3e-189 664.5 402 80.1
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 5.3e-189 664.5 402 79.9
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 5.3e-189 664.5 402 80.3
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 6.9e-189 664.1 402 79.9
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 6.9e-189 664.1 402 79.6
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 80.8
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 79.9
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 79.6
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 80.1
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 80.3
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.2e-188 663.3 402 79.4
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.2e-188 663.3 402 79.6
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.0e-188 662.5 402 79.6
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 2.6e-188 662.1 402 79.9
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.6e-188 662.1 402 79.6
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 3.4e-188 661.8 402 79.4
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 4.5e-188 661.4 402 79.9
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 4.5e-188 661.4 402 79.6
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 4.5e-188 661.4 402 79.6
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 4.5e-188 661.4 402 79.6
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 4.5e-188 661.4 402 79.6
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 5.9e-188 661.0 402 79.4
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 5.9e-188 661.0 402 79.4
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 5.9e-188 661.0 411 78.6
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 5.9e-188 661.0 402 79.4
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 5.9e-188 661.0 402 79.4
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 5.9e-188 661.0 402 79.4
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 7.7e-188 660.6 402 79.4
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 7.7e-188 660.6 402 79.4
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 7.7e-188 660.6 402 79.4
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 7.7e-188 660.6 402 79.4
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 7.7e-188 660.6 402 78.4
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.0e-187 660.2 402 79.4
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.3e-187 659.8 402 80.1
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.7e-187 659.4 402 79.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.7e-187 659.4 402 79.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.7e-187 659.4 402 79.4
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.7e-187 659.4 402 79.1
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 2.2e-187 659.1 402 79.6
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.2e-187 659.1 402 79.1
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 2.9e-187 658.7 402 78.9
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 1.1e-186 656.8 402 78.6
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.4e-186 656.4 402 78.6
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.4e-186 656.4 402 78.4
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.4e-186 656.4 417 77.0
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 2.5e-186 655.6 402 78.4
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 2.5e-186 655.6 402 78.1
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 5.5e-186 654.4 402 78.4
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 7.2e-186 654.1 402 77.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.6e-185 652.9 402 77.1
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.1e-185 652.5 402 78.1
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 2.7e-185 652.1 416 76.7
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.6e-185 651.7 400 77.8
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 7.9e-185 650.6 416 76.4
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.4e-184 649.8 438 73.7
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 3.9e-184 648.3 402 77.9
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 2.0e-183 646.0 400 77.8
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 2.5e-183 645.6 402 77.6
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 2.8e-182 642.1 402 78.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 2.4e-181 639.0 419 76.1
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 4.1e-181 638.3 429 73.2
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.0e-179 633.6 402 76.6
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 2.5e-178 629.0 441 71.0
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 4.2e-178 628.2 401 75.6
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 1.6e-177 626.3 402 75.9
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 5.1e-176 621.3 402 76.6
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 5.1e-176 621.3 402 72.9
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.1e-175 620.2 375 79.7
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 2.7e-169 599.0 402 73.9
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.3e-168 595.9 362 80.1
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.8e-165 586.3 357 78.2
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 7.0e-165 584.3 360 78.1
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.0e-163 580.5 395 69.1
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 8.0e-161 570.9 402 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 5.2e-160 568.2 402 66.9
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 2.6e-159 565.8 402 66.4
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.6e-159 565.8 340 80.9
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 8.3e-158 560.8 402 70.6
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.3e-158 560.8 403 66.3
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 4.1e-157 558.5 403 73.7
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 7.7e-156 554.3 334 80.2
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.0e-155 553.9 400 65.8
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.7e-155 553.1 403 65.0
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.1e-154 550.4 402 65.4
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.6e-153 546.6 402 72.4
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.0e-153 544.3 400 65.5
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 5.9e-148 528.1 402 66.9
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 8.6e-131 471.1 289 77.2
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 3.9e-123 445.7 419 58.0
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 7.8e-116 421.4 259 78.0
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 5.1e-115 418.7 393 52.4
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.9e-109 400.2 394 51.0
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 9.3e-101 371.3 277 67.9
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 2.5e-90 336.7 229 70.7
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 3.4e-87 326.2 215 73.5
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 5.8e-87 325.5 219 71.2
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 1.0e-86 324.7 219 71.2
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.3e-83 313.5 300 53.7
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.6e-71 273.5 159 83.0
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.4e-69 267.7 163 78.5
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.0e-50 204.1 116 84.5
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 5.4e-32 142.9 351 27.1
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 7.0e-32 142.5 351 29.1
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 2.6e-26 124.0 86 70.9
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.3e-14 84.3 47 80.9
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 5.2e-11 73.2 45 71.1
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-10 71.6 320 22.2
Pp3s34_610 Physcomitrium patens HOM05D000068 ORTHO05D011688 1.7e-09 68.2 240 27.1
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 8.3e-09 65.9 352 20.5
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 7.1e-08 62.8 72 48.6


User provided reference genes

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