Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 1.9e-83 312.4 149 100.0
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 5.9e-69 264.2 149 80.5
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 7.7e-69 263.8 149 81.9
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 1.2e-61 240.0 150 74.0
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 7.8e-61 237.3 151 72.2
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 1.0e-57 226.9 154 65.6
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 3.0e-57 225.3 150 66.0
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 2.0e-56 222.6 153 65.4
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 5.7e-56 221.1 144 69.4
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 9.8e-56 220.3 147 66.0
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 9.8e-56 220.3 151 66.9
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 6.4e-55 217.6 150 69.3
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 6.4e-55 217.6 149 66.4
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 8.3e-55 217.2 153 62.7
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.4e-54 215.7 148 65.5
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 3.2e-54 215.3 149 65.1
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 5.4e-54 214.5 148 64.2
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 7.0e-54 214.2 148 65.5
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 9.2e-54 213.8 149 63.1
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 3.5e-53 211.8 147 61.9
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 6.0e-53 211.1 150 64.7
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 6.0e-53 211.1 154 63.0
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 6.0e-53 211.1 144 66.0
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 7.8e-53 210.7 146 61.0
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 7.8e-53 210.7 148 63.5
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 1.7e-52 209.5 147 62.6
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 3.0e-52 208.8 153 59.5
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 1.9e-51 206.1 144 64.6
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 1.9e-51 206.1 154 60.4
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 2.5e-51 205.7 145 65.5
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 7.3e-51 204.1 150 58.7
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 4.7e-50 201.4 150 59.3
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 4.7e-50 201.4 152 58.6
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 6.2e-50 201.1 154 59.1
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 6.2e-50 201.1 154 59.1
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 8.0e-50 200.7 148 60.1
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 8.0e-50 200.7 145 63.4
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 1.4e-49 199.9 155 58.7
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.3e-49 199.1 155 58.7
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.3e-49 199.1 155 58.7
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 2.3e-49 199.1 145 62.8
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 2.3e-49 199.1 146 62.3
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.3e-49 199.1 153 58.8
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.3e-49 199.1 153 58.8
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 4.0e-49 198.4 145 62.1
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 6.8e-49 197.6 145 62.1
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 1.2e-48 196.8 152 57.9
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.5e-48 196.4 144 59.7
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 9.8e-48 193.7 144 59.7
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.7e-47 193.0 149 61.1
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 2.9e-47 192.2 149 58.4
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 3.7e-47 191.8 144 59.7
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 4.9e-47 191.4 144 59.7
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 6.4e-47 191.0 149 55.7
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 8.3e-47 190.7 144 59.0
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 8.3e-47 190.7 144 59.0
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 3.2e-46 188.7 148 58.1
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 9.2e-46 187.2 143 58.7
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 9.2e-46 187.2 147 57.8
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 1.6e-45 186.4 146 60.3
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 2.0e-45 186.0 147 57.1
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 3.5e-45 185.3 153 58.2
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 3.0e-44 182.2 156 57.1
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 5.0e-44 181.4 143 55.9
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 6.6e-44 181.0 145 57.2
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 1.1e-43 180.3 120 68.3
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 1.5e-43 179.9 153 56.9
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 2.5e-43 179.1 143 54.5
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 6.2e-42 174.5 143 56.6
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 1.2e-40 170.2 143 53.1
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 1.2e-40 170.2 145 55.9
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 1.5e-40 169.9 143 53.1
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.5e-40 169.9 127 62.2
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 5.4e-38 161.4 112 63.4
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 4.6e-37 158.3 119 62.2
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 7.8e-37 157.5 148 50.7
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 2.5e-35 152.5 117 58.1
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 3.1e-33 145.6 139 51.1
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 5.8e-32 141.4 157 43.9
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.1e-26 122.9 100 60.0
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 9.3e-22 107.5 94 58.5
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 9.3e-22 107.5 149 38.9
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 6.6e-20 101.3 119 42.9
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 3.2e-14 82.4 65 55.4
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 1.0e-12 77.4 83 43.4
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 1.1e-11 73.9 54 55.6


User provided reference genes

Program Settings