Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.1e-229 799.7 409 100.0
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 2.5e-210 735.3 426 87.8
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 5.4e-205 717.6 426 85.7
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 1.6e-196 689.5 426 82.2
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 1.3e-190 669.8 426 80.0
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 5.4e-189 664.5 426 79.6
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 8.6e-187 657.1 426 78.6
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 8.6e-187 657.1 426 78.9
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 2.1e-180 636.0 428 76.4
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.7e-180 635.6 428 76.4
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 4.7e-177 624.8 435 74.9
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 4.9e-174 614.8 428 73.4
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.1e-170 603.6 426 73.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.4e-168 596.7 423 72.6
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 6.9e-168 594.3 427 71.4
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 1.2e-167 593.6 427 71.9
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 7.6e-167 590.9 427 70.7
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 8.4e-166 587.4 427 70.7
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 3.2e-165 585.5 427 70.7
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 3.2e-165 585.5 424 70.5
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 4.2e-165 585.1 427 71.0
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.2e-164 583.6 427 70.3
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.5e-164 582.0 427 70.3
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.8e-164 580.9 427 70.0
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 7.8e-164 580.9 427 69.1
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 7.8e-164 580.9 427 70.3
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.3e-163 580.1 424 71.2
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.7e-163 579.7 427 69.8
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.7e-163 579.7 427 68.9
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 3.0e-163 578.9 427 69.8
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.0e-163 578.9 424 69.3
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 3.0e-163 578.9 424 69.3
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 3.9e-163 578.6 427 70.0
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 3.9e-163 578.6 427 70.0
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 2.5e-162 575.9 424 69.1
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 4.3e-162 575.1 407 72.0
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 9.6e-162 573.9 426 69.2
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.1e-161 572.8 427 68.4
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.8e-161 572.4 424 68.9
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 6.2e-161 571.2 427 69.1
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 8.1e-161 570.9 427 70.7
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.8e-160 569.7 427 67.2
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 1.8e-160 569.7 427 69.8
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 3.1e-160 568.9 427 68.1
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 3.4e-159 565.5 427 68.1
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 4.5e-159 565.1 427 70.0
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 5.8e-159 564.7 424 68.6
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 7.6e-159 564.3 428 69.6
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.7e-158 563.1 428 68.0
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.7e-158 563.1 427 69.3
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.2e-158 562.8 427 67.7
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.9e-158 561.6 427 67.7
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 3.2e-157 558.9 427 66.5
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 4.2e-157 558.5 427 66.5
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.1e-156 556.2 424 66.0
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 2.7e-156 555.8 428 68.9
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.7e-156 555.8 434 66.6
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 4.6e-156 555.1 427 65.6
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 4.6e-156 555.1 427 65.6
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 7.9e-156 554.3 428 67.8
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.1e-154 550.4 465 63.0
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 7.4e-154 547.7 427 65.6
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.3e-153 547.0 425 67.5
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.6e-153 546.6 424 66.3
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 3.7e-153 545.4 428 67.3
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 8.1e-153 544.3 427 65.6
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.0e-152 542.0 431 64.3
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 4.0e-152 542.0 462 64.9
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 5.3e-152 541.6 408 68.9
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 9.0e-152 540.8 427 67.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 3.4e-151 538.9 424 66.0
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.6e-151 537.7 427 65.8
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 2.2e-150 536.2 461 64.2
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 3.8e-150 535.4 425 65.9
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 8.4e-150 534.3 427 66.3
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.2e-148 530.4 427 64.6
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 4.6e-148 528.5 405 66.2
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.6e-145 520.0 410 66.8
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.8e-144 516.5 425 63.3
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 5.3e-144 515.0 424 61.3
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 3.8e-142 508.8 430 62.8
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 6.5e-142 508.1 410 66.3
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 4.6e-140 501.9 428 62.4
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 6.1e-140 501.5 428 61.7
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 7.9e-140 501.1 428 61.7
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 7.9e-140 501.1 427 61.6
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.8e-139 500.0 426 61.7
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 2.3e-139 499.6 424 59.9
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 3.0e-139 499.2 427 63.2
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 1.1e-138 497.3 428 61.4
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 1.9e-138 496.5 428 61.9
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 2.5e-138 496.1 427 61.8
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 3.3e-138 495.7 418 60.8
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 5.7e-138 495.0 385 66.5
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 7.4e-138 494.6 427 61.1
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.2e-137 493.0 410 63.2
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.8e-137 492.7 428 61.4
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 1.1e-136 490.7 428 59.3
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.5e-135 486.9 428 61.4
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.0e-135 486.5 428 61.4
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.0e-134 484.2 428 60.3
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.9e-134 482.6 428 60.7
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 1.4e-133 480.3 427 60.2
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.4e-133 480.3 427 59.5
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 1.9e-133 479.9 427 60.0
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 1.9e-133 479.9 427 60.0
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.6e-132 476.9 427 58.8
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.6e-132 476.9 427 58.8
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 6.1e-132 474.9 426 58.9
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.5e-130 470.3 427 58.5
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.0e-130 469.9 427 58.5
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 2.0e-130 469.9 428 59.6
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 4.3e-130 468.8 439 59.9
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 5.7e-130 468.4 428 59.1
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 1.7e-129 466.8 325 72.9
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.1e-128 464.2 427 59.3
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.6e-127 459.5 314 74.2
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 2.9e-126 456.1 393 62.3
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.3e-123 446.4 426 55.2
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 4.4e-122 442.2 388 61.1
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 3.7e-121 439.1 357 61.6
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 9.1e-120 434.5 428 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 3.5e-119 432.6 452 51.8
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 3.5e-119 432.6 446 54.0
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 3.2e-117 426.0 429 52.9
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 6.5e-110 401.7 378 58.2
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 4.7e-108 395.6 429 50.6
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 5.2e-99 365.5 398 52.0
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.8e-96 357.1 338 58.9
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 7.7e-95 351.7 415 51.3
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 7.7e-95 351.7 242 76.0
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 2.3e-94 350.1 338 58.9
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 1.8e-91 340.5 273 61.9
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.8e-88 330.5 325 55.1
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 7.0e-88 328.6 240 71.7
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 6.8e-67 258.8 432 37.0
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.6e-62 242.3 198 63.1
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 4.0e-59 233.0 355 38.6
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.7e-57 227.6 326 45.1
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.3e-46 191.4 177 59.9
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-45 188.3 350 39.1
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.5e-45 187.2 195 56.4
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 4.0e-43 179.9 295 41.7
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 2.6e-42 177.2 138 61.6
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 2.4e-40 170.6 195 52.3
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 3.2e-40 170.2 251 41.8
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.4e-32 144.8 336 29.5
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 2.5e-29 134.0 149 49.0
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 2.1e-28 131.0 105 68.6
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.2e-28 129.4 116 56.9
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 6.1e-23 112.8 78 66.7
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 6.1e-23 112.8 78 66.7
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 1.0e-22 112.1 76 71.1
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 7.4e-21 105.9 125 46.4
Cfa025081 Carpinus fangiana HOM05D004649 ORTHO05D005446 1.0e-14 85.5 330 23.3
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 7.4e-13 79.3 48 79.2
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 3.7e-12 77.0 53 69.8
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 8.2e-12 75.9 62 59.7
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 6.9e-11 72.8 53 71.7
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.5e-08 64.3 133 36.1
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 2.1e-07 61.2 38 71.1
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.6e-07 60.5 49 61.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.6e-07 60.5 49 61.2
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 6.7e-06 56.2 44 59.1
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 6.7e-06 56.2 52 55.8


User provided reference genes

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